RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 GNASQ5JWF2 1037 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TEDDM1Q5T9Z0 273 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 FAM72AQ5TYM5 149 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 FAM72DQ6L9T8 149 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 AGMOQ6ZNB7 445 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 RINLQ6ZS11 566 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 BHLHA9Q7RTU4 235 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TAC4Q86UU9 113 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 FAM72BQ86X60 149 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 LMNTD2Q8IXW0 634 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 DCLK2Q8N568 766 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ATPAF2Q8N5M1 289 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 NPWQ8N729 165 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 RNF169Q8NCN4 708 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ADAM32Q8TC27 787 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 DQX1Q8TE96 717 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 AGAP3Q96P47 875 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 CCDC106Q9BWC9 280 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 MRM3Q9HC36 420 aaKnown RBP7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TMPRSS4Q9NRS4 437 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ABCC13Q9NSE7 274 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ARHGEF38Q9NXL2 777 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TAS2R1Q9NYW7 299 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 ANGPTL2Q9UKU9 493 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 NR2E3Q9Y5X4 410 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 NUMBLQ9Y6R0 609 aa7.41□□□□□ -1.22
VPS13C-206ENST00000558338 TDRD15B5MCY1 1934 aaKnown RBP7.4□□□□□ -1.22
VPS13C-206ENST00000558338 FNDC1Q4ZHG4 1894 aaPredicted RBP7.4□□□□□ -1.22
VPS13C-206ENST00000558338 PTPRDP23468 1912 aa7.4□□□□□ -1.22
VPS13C-206ENST00000558338 ZCWPW2A0A1B0GU75 182 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 MOXD2PA6NHM9 499 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 B2RBV5 119 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 IRAK2O43187 625 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 TM7SF2O76062 418 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 PSMG1O95456 288 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 GSRP00390 522 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 RPSAP08865 295 aaKnown RBP7.4□□□□□ -1.23
VPS13C-206ENST00000558338 KITP10721 976 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 COL6A2P12110 1019 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 ACADSP16219 412 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 PAMP19021 973 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 PRDX6P30041 224 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 CD68P34810 354 aaPredicted RBP7.4□□□□□ -1.23
VPS13C-206ENST00000558338 MXRA7P84157 204 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 NRG1Q02297 640 aaPredicted RBP7.4□□□□□ -1.23
VPS13C-206ENST00000558338 ZBTB17Q13105 803 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 TUSC3Q13454 348 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 RCN2Q14257 317 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 TIGD5Q53EQ6 642 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 CFAP157Q5JU67 520 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 PCID2Q5JVF3 399 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 BTBD8Q5XKL5 378 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 GDF6Q6KF10 455 aaPredicted RBP7.4□□□□□ -1.23
VPS13C-206ENST00000558338 C16orf46Q6P387 395 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 ZCCHC23Q6ZST2 131 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 TTC7BQ86TV6 843 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 C10orf107Q8IVU9 208 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 UNC5BQ8IZJ1 945 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 PPFIBP2Q8ND30 876 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 PPHLN1Q8NEY8 458 aaKnown RBP7.4□□□□□ -1.23
VPS13C-206ENST00000558338 CMTM5Q96DZ9 223 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 FCRL5Q96RD9 977 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 KCNK16Q96T55 309 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 GORASP1Q9BQQ3 440 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 KIFC1Q9BW19 673 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 SMOC2Q9H3U7 446 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 C20orf96Q9NUD7 363 aaPredicted RBP7.4□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF212Q9UDV6 495 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 DNAJB4Q9UDY4 337 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 MARCOQ9UEW3 520 aaPredicted RBP7.4□□□□□ -1.23
VPS13C-206ENST00000558338 LRRC42Q9Y546 428 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 PCDHB12Q9Y5F1 795 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 PSAT1Q9Y617 370 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 SQORQ9Y6N5 450 aa7.4□□□□□ -1.23
VPS13C-206ENST00000558338 A0A096LPK6 155 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 A0A0U1RQF3 1178 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 C2orf71A6NGG8 1288 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 NEBLO76041 1014 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 B3GAT3O94766 335 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 HSPA4LO95757 839 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 CHRNA1P02708 482 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 CTSHP09668 335 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 CYBAP13498 195 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 BDNFP23560 247 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 CCR1P32246 355 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF157P51786 506 aaPredicted RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 CACNA2D1P54289 1103 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 ALDH18A1P54886 795 aaKnown RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 IRX4P78413 519 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 SLC34A1Q06495 639 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 SREBF2Q12772 1141 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 BIRC2Q13490 618 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 PPP2R5DQ14738 602 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 KPNB1Q14974 876 aaKnown RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 RCN1Q15293 331 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 MUM1Q2TAK8 710 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 OVOS1Q6IE37 1185 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 FSTL4Q6MZW2 842 aa7.39□□□□□ -1.23
VPS13C-206ENST00000558338 RWDD4Q6NW29 188 aaKnown RBP7.39□□□□□ -1.23
VPS13C-206ENST00000558338 CLEC14AQ86T13 490 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms