RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 GGA2Q9UJY4 613 aa17.21■□□□□ 0.35
SNX1-203ENST00000558040 CLEC4EQ9ULY5 219 aa17.21■□□□□ 0.35
SNX1-203ENST00000558040 OR51B4Q9Y5P0 310 aa17.21■□□□□ 0.35
SNX1-203ENST00000558040 NUP205Q92621 2012 aa17.21■□□□□ 0.35
SNX1-203ENST00000558040 CXorf51AA0A1B0GTR3 108 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 BHMG1C9JSJ3 638 aaPredicted RBP17.2■□□□□ 0.34
SNX1-203ENST00000558040 JCHAINP01591 159 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 PABPC1P11940 636 aaKnown RBP17.2■□□□□ 0.34
SNX1-203ENST00000558040 ITIH2P19823 946 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 TNFRSF8P28908 595 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 HLA-FP30511 346 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 CD70P32970 193 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 FDFT1P37268 417 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 RPL21P46778 160 aaKnown RBP17.2■□□□□ 0.34
SNX1-203ENST00000558040 ZBTB17Q13105 803 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 NAA30Q147X3 362 aaPredicted RBP17.2■□□□□ 0.34
SNX1-203ENST00000558040 PLEKHG6Q3KR16 790 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 PITRM1Q5JRX3 1037 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 PTCRAQ6ISU1 281 aaPredicted RBP17.2■□□□□ 0.34
SNX1-203ENST00000558040 RETSATQ6NUM9 610 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 PRUNE1Q86TP1 453 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 ZNF567Q8N184 647 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.2■□□□□ 0.34
SNX1-203ENST00000558040 EIF1ADQ8N9N8 165 aaKnown RBP17.2■□□□□ 0.34
SNX1-203ENST00000558040 ALG14Q96F25 216 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 TEKT5Q96M29 485 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 PPP1R2P1Q96PQ5 205 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 PNKPQ96T60 521 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 IL12RB2Q99665 862 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 PARD6BQ9BYG5 372 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 BRD9Q9H8M2 597 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 PDFQ9HBH1 243 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 DNAJC17Q9NVM6 304 aaKnown RBP17.2■□□□□ 0.34
SNX1-203ENST00000558040 SNX24Q9Y343 169 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 CHD5Q8TDI0 1954 aa17.2■□□□□ 0.34
SNX1-203ENST00000558040 ESYT3A0FGR9 886 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 DNALI1O14645 258 aaPredicted RBP17.19■□□□□ 0.34
SNX1-203ENST00000558040 PEX11BO96011 259 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 MMP13P45452 471 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 DGKGP49619 791 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 NRLP54845 237 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 BASP1P80723 227 aaKnown RBP17.19■□□□□ 0.34
SNX1-203ENST00000558040 CAV1Q03135 178 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 SULT2A1Q06520 285 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 TNK2Q07912 1038 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 HLTFQ14527 1009 aaKnown RBP eCLIP17.19■□□□□ 0.34
SNX1-203ENST00000558040 ZNF235Q14590 738 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 LBRQ14739 615 aaKnown RBP17.19■□□□□ 0.34
SNX1-203ENST00000558040 PARP6Q2NL67 630 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 ITPRIPL2Q3MIP1 535 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 PREPLQ4J6C6 727 aaPredicted RBP17.19■□□□□ 0.34
SNX1-203ENST00000558040 IZUMO3Q5VZ72 239 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 METTL3Q86U44 580 aaKnown RBP17.19■□□□□ 0.34
SNX1-203ENST00000558040 APCDD1Q8J025 514 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 AHI1Q8N157 1196 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 TEX26Q8N6G2 289 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 NAT16Q8N8M0 369 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 WFIKKN2Q8TEU8 576 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 USP33Q8TEY7 942 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 CASKIN2Q8WXE0 1202 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 IFT81Q8WYA0 676 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 LMLNQ96KR4 655 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 AGAP3Q96P47 875 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 HINFPQ9BQA5 517 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 CEP41Q9BYV8 373 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 RAB6BQ9NRW1 208 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 RBM22Q9NW64 420 aaKnown RBP eCLIP17.19■□□□□ 0.34
SNX1-203ENST00000558040 IGSF9Q9P2J2 1179 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 SEPT3Q9UH03 358 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 RSPH14Q9UHP6 348 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 VPS51Q9UID3 782 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 FBXO10Q9UK96 956 aa17.19■□□□□ 0.34
SNX1-203ENST00000558040 TPX2Q9ULW0 747 aaKnown RBP17.19■□□□□ 0.34
SNX1-203ENST00000558040 GOLGA6CA6NDK9 693 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 GOLGA6BA6NDN3 693 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.18■□□□□ 0.34
SNX1-203ENST00000558040 SMAPO00193 183 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 SEC31AO94979 1220 aaKnown RBP17.18■□□□□ 0.34
SNX1-203ENST00000558040 GOLGA6DP0CG33 693 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 IVDP26440 423 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 SLC20A2Q08357 652 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 PRPSAP1Q14558 356 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 GRAMD4Q6IC98 578 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 ETFBKMTQ8IXQ9 262 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 PPIL6Q8IXY8 311 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 MAFAQ8NHW3 353 aaPredicted RBP17.18■□□□□ 0.34
SNX1-203ENST00000558040 CSGALNACT1Q8TDX6 532 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.18■□□□□ 0.342e-6■■■■■ 29
SNX1-203ENST00000558040 RPP25Q9BUL9 199 aaKnown RBP17.18■□□□□ 0.34
SNX1-203ENST00000558040 CINPQ9BW66 212 aaPredicted RBP17.18■□□□□ 0.34
SNX1-203ENST00000558040 GBA3Q9H227 469 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 GOLGA6AQ9NYA3 693 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 DEC1Q9P2X7 70 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 ANAPC5Q9UJX4 755 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 RAB21Q9UL25 225 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 SLC27A6Q9Y2P4 619 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 SHROOM3Q8TF72 1996 aa17.18■□□□□ 0.34
SNX1-203ENST00000558040 E7EVH7 732 aa17.17■□□□□ 0.34
SNX1-203ENST00000558040 ZBTB24O43167 697 aaPredicted RBP17.17■□□□□ 0.34
SNX1-203ENST00000558040 SNAP91O60641 907 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms