RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ANKRD1Q15327 319 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 SH2D4BQ5SQS7 431 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 CYP26C1Q6V0L0 522 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 BBS12Q6ZW61 710 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 TRIM74Q86UV6 250 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 TRIM73Q86UV7 250 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 LRRTM4Q86VH4 590 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 FAM185AQ8N0U4 392 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 TMEM199Q8N511 208 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 LRRC57Q8N9N7 239 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 USP38Q8NB14 1042 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 NCSTNQ92542 709 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 TEFMQ96QE5 360 aaKnown RBP4.95□□□□□ -1.62
SCFD1-221ENST00000556534 IFT27Q9BW83 186 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.95□□□□□ -1.62
SCFD1-221ENST00000556534 TBC1D14Q9P2M4 693 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 SQORQ9Y6N5 450 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 MST1RQ04912 1400 aa4.95□□□□□ -1.62
SCFD1-221ENST00000556534 PEX12O00623 359 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 KLK10O43240 276 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 TMCC1O94876 653 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 SYF2O95926 243 aaKnown RBP4.94□□□□□ -1.62
SCFD1-221ENST00000556534 KLKB1P03952 638 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 CPA1P15085 419 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 PTPN9P43378 593 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 CCT5P48643 541 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 CCR5P51681 352 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 PPATQ06203 517 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 ZRSR2Q15696 482 aaKnown RBP4.94□□□□□ -1.62
SCFD1-221ENST00000556534 RPE65Q16518 533 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 TMEM95Q3KNT9 176 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 SYTL3Q4VX76 610 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 NAPEPLDQ6IQ20 393 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 GLCCI1Q86VQ1 547 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 WDR5BQ86VZ2 330 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 EXOC8Q8IYI6 725 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 PELI3Q8N2H9 469 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 DPP10Q8N608 796 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 SETD9Q8NE22 299 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 LPAR1Q92633 364 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 ZBTB9Q96C00 473 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 UBXN10Q96LJ8 280 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 REEP2Q9BRK0 252 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 CHMP4AQ9BY43 222 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 B3GNT4Q9C0J1 378 aa4.94□□□□□ -1.62
SCFD1-221ENST00000556534 STN1Q9H668 368 aaKnown RBP4.94□□□□□ -1.62
SCFD1-221ENST00000556534 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.94□□□□□ -1.62
SCFD1-221ENST00000556534 FAM90A10PA6NDY2 464 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 FAM90A7PA6NKC0 464 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 FAM90A22PA8MWA6 464 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 FAM90A12PA8MX19 464 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 FAM90A23PA8MXZ1 464 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 H0YGN5 161 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 HBP1O60381 514 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 CD72P21854 359 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 HNF1BP35680 557 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 CLCNKBP51801 687 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 P2RX3P56373 397 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 GOLGA8FQ08AF8 430 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 Q5PR19 223 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 TMEM71Q6P5X7 295 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 PARM1Q6UWI2 310 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 FAM217AQ8IXS0 508 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 ENGASEQ8NFI3 743 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 CAMK1GQ96NX5 476 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 WDR77Q9BQA1 342 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-221ENST00000556534 LMAN2LQ9H0V9 348 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 KLHL31Q9H511 634 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 CXorf56Q9H5V9 222 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 RIC8AQ9NPQ8 531 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 SIRT3Q9NTG7 399 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-221ENST00000556534 GRHL1Q9NZI5 618 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 PLEKHB1Q9UF11 243 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-221ENST00000556534 FBXO40Q9UH90 709 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 SLC4A4Q9Y6R1 1079 aa4.93□□□□□ -1.62
SCFD1-221ENST00000556534 TTC3P53804 2025 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 TARSL2A2RTX5 802 aaKnown RBP4.92□□□□□ -1.62
SCFD1-221ENST00000556534 OR6C68A6NDL8 312 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 CD8B2A6NJW9 211 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 STRNO43815 780 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 TSPAN3O60637 253 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 NTN1O95631 604 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 CRYABP02511 175 aaKnown RBP4.92□□□□□ -1.62
SCFD1-221ENST00000556534 SKIV2L2P42285 1042 aaKnown RBP4.92□□□□□ -1.62
SCFD1-221ENST00000556534 RASSF2P50749 326 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 SELENOVP59797 346 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 UBE3AQ05086 875 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 BIRC3Q13489 604 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 CPXCR1Q8N123 301 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 ZNF366Q8N895 744 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 LSM14AQ8ND56 463 aaKnown RBP4.92□□□□□ -1.62
SCFD1-221ENST00000556534 CLSTN3Q9BQT9 956 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 PHF7Q9BWX1 381 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-221ENST00000556534 NPLQ9BXD5 320 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-221ENST00000556534 MROH8Q9H579 483 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 RRN3Q9NYV6 651 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 NLKQ9UBE8 527 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 CDH22Q9UJ99 828 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 DHDHQ9UQ10 334 aa4.92□□□□□ -1.62
SCFD1-221ENST00000556534 RAP2CQ9Y3L5 183 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms