RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 ANKRD62A6NC57 917 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 RNF103O00237 685 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 PLK4O00444 970 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ARHGAP33O14559 1287 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ALOX15BO15296 676 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 RTN2O75298 545 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 RNASEH2AO75792 299 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ADH1BP00325 375 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 IL1BP01584 269 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 GYPCP04921 128 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ACVRL1P37023 503 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 MAPK8P45983 427 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 MAPKAPK2P49137 400 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ARF5P84085 180 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ZBED6P86452 979 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 BNC1Q01954 994 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 SLC20A2Q08357 652 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 SFSWAPQ12872 951 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 SEMA3BQ13214 749 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 PPM1JQ5JR12 505 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 DAB2IPQ5VWQ8 1189 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 KIAA0895LQ68EN5 471 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 RWDD4Q6NW29 188 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 SCYL2Q6P3W7 929 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 TMC6Q7Z403 805 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 HDDC3Q8N4P3 179 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ZCCHC9Q8N567 271 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ATP11CQ8NB49 1132 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 OR2A12Q8NGT7 310 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 OR2I1PQ8NGU4 316 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 GANCQ8TET4 914 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 FNIP1Q8TF40 1166 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 CPLX3Q8WVH0 158 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 OR8D1Q8WZ84 308 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ARHGEF2Q92974 986 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 TBC1D31Q96DN5 1066 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 SPON2Q9BUD6 331 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 TRIM7Q9C029 511 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 XPO4Q9C0E2 1151 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 MIR1-1HGQ9H1L0 117 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 NOL6Q9H6R4 1146 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 EBF2Q9HAK2 575 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ATP13A1Q9HD20 1204 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 OSGEPQ9NPF4 335 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 ACTL7AQ9Y615 435 aa10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 BZW2Q9Y6E2 419 aaKnown RBP10.51□□□□□ -0.73
CCDC88C-206ENST00000553437 THADAQ6YHU6 1953 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 CXorf51AA0A1B0GTR3 108 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 WASH4PA8MWX3 477 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 CBX4O00257 560 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 BCAT2O15382 392 aaPredicted RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 ZZEF1O43149 2961 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 GJB3O75712 270 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 FSBPO95073 299 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 KCNK5O95279 499 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 SERPING1P05155 500 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 CTSLP07711 333 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 SYPP08247 313 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 PSMA2P25787 234 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 CD27P26842 260 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 SERPINH1P50454 418 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 ADPRHP54922 357 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 AIF1P55008 147 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 GRIK2Q13002 908 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 UAP1L1Q3KQV9 507 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 EFHC2Q5JST6 749 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 RETSATQ6NUM9 610 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 C22orf39Q6P5X5 142 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 NCEH1Q6PIU2 408 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 LRSAM1Q6UWE0 723 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 CYP4V2Q6ZWL3 525 aaPredicted RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 DSG4Q86SJ6 1040 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 MINDY1Q8N5J2 469 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 RTL3Q8N8U3 475 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 CHST14Q8NCH0 376 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 OR2T34Q8NGX1 318 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 VOPP1Q96AW1 172 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 IQCDQ96DY2 449 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 PEBP4Q96S96 227 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 OMDQ99983 421 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 GTPBP2Q9BX10 602 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 DNAAF2Q9NVR5 837 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 ARHGAP20Q9P2F6 1191 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 CNOT8Q9UFF9 292 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 DNAI1Q9UI46 699 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 LUC7L2Q9Y383 392 aaKnown RBP10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 GON4LQ3T8J9 2241 aa10.5□□□□□ -0.73
CCDC88C-206ENST00000553437 A0A087X0T9 212 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 A0A1W2PPC4 97 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 FAM47DPA6NHR8 397 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 LRRC72A6NJI9 287 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 UPK3BL1B0FP48 263 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 UPK3BL2E5RIL1 263 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 GIPC1O14908 333 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 ADRB1P08588 477 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 FAM228BP0C875 321 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 MYBL1P10243 752 aa10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 CSRP1P21291 193 aaKnown RBP10.49□□□□□ -0.73
CCDC88C-206ENST00000553437 EPHB2P29323 1055 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms