RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PKMYT1Q99640 499 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 AGPAT1Q99943 283 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ACBD6Q9BR61 282 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 RHOBTB2Q9BYZ6 727 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 KLHL4Q9C0H6 718 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 SMOC2Q9H3U7 446 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ABI2Q9NYB9 513 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-216ENST00000552909 SPATA7Q9P0W8 599 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 PPM1HQ9ULR3 514 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 ZNF148Q9UQR1 794 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 YIPF1Q9Y548 306 aa7.84□□□□□ -1.15
LIMA1-216ENST00000552909 C15orf38-AP3S2A0A0A6YYH1 394 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ARHGAP10A1A4S6 786 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 WDR91A4D1P6 747 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 FCHO1O14526 889 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 XYLBO75191 536 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 PDE5AO76074 875 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 STAU1O95793 577 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ASS1P00966 412 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 RHOP08100 348 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 CPA3P15088 417 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ALOX15P16050 662 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 PORP16435 677 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 CYP2F1P24903 491 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 GNL1P36915 607 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 CPA2P48052 419 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 LHX1P48742 406 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 GPR15P49685 360 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ERFP50548 548 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 MTTPP55157 894 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 GEMIN4P57678 1058 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 TBL3Q12788 808 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ADRM1Q16186 407 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 DNAL1Q4LDG9 190 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 SFT2D3Q587I9 215 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 FAM91A1Q658Y4 838 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 GRAMD4Q6IC98 578 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 LRRC8BQ6P9F7 803 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 UGT2A3Q6UWM9 527 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 GET4Q7L5D6 327 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ARPINQ7Z6K5 226 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 SLC47A2Q86VL8 602 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ULK2Q8IYT8 1036 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ZBED8Q8IZ13 594 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 OR6B3Q8NGW1 331 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 RSAD2Q8WXG1 361 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ING5Q8WYH8 240 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 OXNAD1Q96HP4 312 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 FAM81BQ96LP2 452 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 RBM15Q96T37 977 aaKnown RBP eCLIP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 SEPT5Q99719 369 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 TSSK1BQ9BXA7 367 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 FOXP3Q9BZS1 431 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 BRD8Q9H0E9 1235 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 DPEP3Q9H4B8 488 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 MANSC1Q9H8J5 431 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 VRTNQ9H8Y1 702 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 SSU72Q9NP77 194 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 CRTAC1Q9NQ79 661 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 FAIMQ9NVQ4 179 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 DMTF1Q9Y222 760 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 USTQ9Y2C2 406 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 PCDHB4Q9Y5E5 795 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 BOLA2-SMG1P6H3BVE0 249 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 TXNDC9O14530 226 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 MTA2O94776 668 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 TGDSO95455 350 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 CLPTM1O96005 669 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 CALCAP01258 141 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 SMIM18P0DKX4 95 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 GJA1P17302 382 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ATF6P18850 670 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 WARSP23381 471 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 RRM1P23921 792 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 FSHRP23945 695 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 TBXAS1P24557 533 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ADRA1DP25100 572 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ATICP31939 592 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 AQP4P55087 323 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 COG7P83436 770 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 GSTM4Q03013 218 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ORC1Q13415 861 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 RASA2Q15283 850 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 LRRC36Q1X8D7 754 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 MGAT5BQ3V5L5 792 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF667Q5HYK9 610 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 INTS6LQ5JSJ4 861 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 SDHAF4Q5VUM1 108 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 IZUMO3Q5VZ72 239 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 FAM171BQ6P995 826 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 KLHL35Q6PF15 583 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 TMEM270Q6UE05 265 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 DNAJC14Q6Y2X3 702 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 RTL10Q7L3V2 364 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 PASD1Q8IV76 773 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 CCDC89Q8N998 374 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 TDRD5Q8NAT2 981 aaKnown RBP7.83□□□□□ -1.16
LIMA1-216ENST00000552909 GIPC2Q8TF65 315 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 SLC20A1Q8WUM9 679 aa7.83□□□□□ -1.16
LIMA1-216ENST00000552909 ATG4AQ8WYN0 398 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms