RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 NAT10Q9H0A0 1025 aaKnown RBP11.14□□□□□ -0.63
VTI1BP3-201ENST00000550220 OSBPL2Q9H1P3 480 aa11.14□□□□□ -0.63
VTI1BP3-201ENST00000550220 VPS51Q9UID3 782 aa11.14□□□□□ -0.63
VTI1BP3-201ENST00000550220 NOCTQ9UK39 431 aaKnown RBP11.14□□□□□ -0.63
VTI1BP3-201ENST00000550220 SLCO1B1Q9Y6L6 691 aa11.14□□□□□ -0.63
VTI1BP3-201ENST00000550220 A0A1W2PR77 199 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 ANKRD62A6NC57 917 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 BNIP3LO60238 219 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 MBD3O95983 291 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 CALB1P05937 261 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 KRT3P12035 628 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 TFE3P19532 575 aaPredicted RBP11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 ADRA1BP35368 520 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 PTPN9P43378 593 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 MAPKAPK2P49137 400 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 IRAK1P51617 712 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 COPB1P53618 953 aaKnown RBP11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 GSCP56915 257 aaPredicted RBP11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 JAM2P57087 298 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 FMO1Q01740 532 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 GNA12Q03113 381 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 CNTN1Q12860 1018 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 AGBL4Q5VU57 503 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 PPP1R2P3Q6NXS1 205 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 SLCO6A1Q86UG4 719 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 PLPP6Q8IY26 295 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 PCDH20Q8N6Y1 951 aaKnown RBP11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 PNPLA1Q8N8W4 532 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 OR52K2Q8NGK3 314 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 OR2A12Q8NGT7 310 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 RXFP2Q8WXD0 754 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 LRIG1Q96JA1 1093 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 PSMB7Q99436 277 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 SPON2Q9BUD6 331 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 HDAC8Q9BY41 377 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 EBF2Q9HAK2 575 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 ATP13A1Q9HD20 1204 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 NLRC4Q9NPP4 1024 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 ANLNQ9NQW6 1124 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 MPP6Q9NZW5 540 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 ARHGAP20Q9P2F6 1191 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 FTSJ1Q9UET6 329 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 OR12D3Q9UGF7 316 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 LIMA1Q9UHB6 759 aaKnown RBP11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 SARDHQ9UL12 918 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 HPCAL4Q9UM19 191 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 PCDHGA1Q9Y5H4 931 aa11.13□□□□□ -0.63
VTI1BP3-201ENST00000550220 NUMA1Q14980 2115 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 A0A0D9SEW6 157 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 LGALS16A8MUM7 142 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 I6L893 689 aaPredicted RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 CBX4O00257 560 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 KPNA3O00505 521 aaPredicted RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 KCNK3O14649 394 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 SNAP91O60641 907 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 ABCB7O75027 752 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 RTN2O75298 545 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 MT-CO1P00395 513 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 ATXN1LP0C7T5 689 aaKnown RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 UNGP13051 313 aaPredicted RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 RHOQP17081 205 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 GGCXP38435 758 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 NXPH1P58417 271 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 ATP11AP98196 1134 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 UBXN1Q04323 297 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 CCDC14Q49A88 953 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 KCNT1Q5JUK3 1230 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 ERN2Q76MJ5 926 aaKnown RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 TFAP2DQ7Z6R9 452 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 FAM131BQ86XD5 332 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 PHF13Q86YI8 300 aaPredicted RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 GPT2Q8TD30 523 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 SAP25Q8TEE9 199 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 CENPIQ92674 756 aaPredicted RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 ISG20Q96AZ6 181 aaKnown RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 ERGIC2Q96RQ1 377 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 SELENOOQ9BVL4 669 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 MAGEH1Q9H213 219 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 METTL5Q9NRN9 209 aaKnown RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 DONSONQ9NYP3 566 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 ADAM22Q9P0K1 906 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 IL36AQ9UHA7 158 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 SIK3Q9Y2K2 1263 aa11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 MUC22E2RYF6 1773 aaPredicted RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 KMT2BQ9UMN6 2715 aaPredicted RBP11.12□□□□□ -0.63
VTI1BP3-201ENST00000550220 ZSCAN5CA6NGD5 496 aaPredicted RBP11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 C2CD4BA6NLJ0 364 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 SIGLEC16A6NMB1 481 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 ZMPSTE24O75844 475 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 LDOC1O95751 146 aaPredicted RBP11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 WNT1P04628 370 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 CHRNB2P17787 502 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 AKT2P31751 481 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 SERPINH1P50454 418 aaKnown RBP11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 AIF1P55008 147 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 PPP2CBP62714 309 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 PPP2CAP67775 309 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 HS1BP3Q53T59 392 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 C2CD6Q53TS8 623 aa11.11□□□□□ -0.63
VTI1BP3-201ENST00000550220 CARD16Q5EG05 197 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms