RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MX2P20592 715 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 IL12RB1P42701 662 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 WASP42768 502 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 NR2C2P49116 596 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 MRPS21P82921 87 aaKnown RBP21.63■■□□□ 1.05
VPS29-206ENST00000549578 OTUD4Q01804 1114 aaKnown RBP21.63■■□□□ 1.05
VPS29-206ENST00000549578 B4GALNT4Q76KP1 1039 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 CHPFQ8IZ52 775 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 ZNF366Q8N895 744 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 IL17RCQ8NAC3 791 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 ACTL9Q8TC94 416 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 LGMNQ99538 433 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 HS3ST2Q9Y278 367 aa21.63■■□□□ 1.05
VPS29-206ENST00000549578 SHROOM3Q8TF72 1996 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 NCAM2O15394 837 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 KLF8O95600 359 aaPredicted RBP21.62■■□□□ 1.05
VPS29-206ENST00000549578 SRPRAP08240 638 aaKnown RBP21.62■■□□□ 1.05
VPS29-206ENST00000549578 TCP1P17987 556 aaKnown RBP21.62■■□□□ 1.05
VPS29-206ENST00000549578 ST8SIA6P61647 398 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 GAS6Q14393 721 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 PDK1Q15118 436 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 SERPINA13PQ6UXR4 307 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 ZC3H18Q86VM9 953 aaKnown RBP21.62■■□□□ 1.05
VPS29-206ENST00000549578 SYNPOQ8N3V7 929 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 ATP11CQ8NB49 1132 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 CCNYQ8ND76 341 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 KCNV2Q8TDN2 545 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 CLDN23Q96B33 292 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 SMARCAL1Q9NZC9 954 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 R3HDM2Q9Y2K5 976 aaKnown RBP21.62■■□□□ 1.05
VPS29-206ENST00000549578 RAD54BQ9Y620 910 aa21.62■■□□□ 1.05
VPS29-206ENST00000549578 ZSCAN5CA6NGD5 496 aaPredicted RBP21.61■■□□□ 1.05
VPS29-206ENST00000549578 SMAD6O43541 496 aaKnown RBP21.61■■□□□ 1.05
VPS29-206ENST00000549578 SRCP12931 536 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 HLA-EP13747 358 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 PRKCHP24723 683 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 SERPINH1P50454 418 aaKnown RBP21.61■■□□□ 1.05
VPS29-206ENST00000549578 IL10RBQ08334 325 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 NOMO1Q15155 1222 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 RASGEF1CQ8N431 466 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 SH2D3CQ8N5H7 860 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 TXNDC5Q8NBS9 432 aaKnown RBP21.61■■□□□ 1.05
VPS29-206ENST00000549578 CCDC26Q8TAB7 109 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 PBXIP1Q96AQ6 731 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 HDAC11Q96DB2 347 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 UBA2Q9UBT2 640 aaPredicted RBP21.61■■□□□ 1.05
VPS29-206ENST00000549578 SAR1BQ9Y6B6 198 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 STON1Q9Y6Q2 735 aa21.61■■□□□ 1.05
VPS29-206ENST00000549578 TTC34A8MYJ7 566 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 PPP1R12AO14974 1030 aaPredicted RBP21.6■■□□□ 1.05
VPS29-206ENST00000549578 ADAM23O75077 832 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 AOC1P19801 751 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 NTSR1P30989 418 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 LONRF2Q1L5Z9 754 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 BZW1Q7L1Q6 419 aaKnown RBP21.6■■□□□ 1.05
VPS29-206ENST00000549578 LRRC49Q8IUZ0 686 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 ERLEC1Q96DZ1 483 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 TMEM245Q9H330 911 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 MTG2Q9H4K7 406 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 POLR3BQ9NW08 1133 aaPredicted RBP21.6■■□□□ 1.05
VPS29-206ENST00000549578 FCF1Q9Y324 198 aaKnown RBP21.6■■□□□ 1.05
VPS29-206ENST00000549578 FAM86C2PA6NEL3 165 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 SGK1O00141 431 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 CES2O00748 559 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 PEX11BO96011 259 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 PRLRP16471 622 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 NNMTP40261 264 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 GEMIN4P57678 1058 aaKnown RBP21.6■■□□□ 1.05
VPS29-206ENST00000549578 SLC20A2Q08357 652 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 PPIDQ08752 370 aaKnown RBP21.6■■□□□ 1.05
VPS29-206ENST00000549578 AP1B1Q10567 949 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 ENPP2Q13822 863 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 ACCSLQ4AC99 568 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 TRMT11Q7Z4G4 463 aaKnown RBP21.6■■□□□ 1.05
VPS29-206ENST00000549578 TSGA13Q96PP4 275 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 CHRDQ9H2X0 955 aa21.6■■□□□ 1.05
VPS29-206ENST00000549578 NPC1O15118 1278 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 ATP9BO43861 1147 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 TMCC1O94876 653 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 VAV1P15498 845 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 CCNCP24863 283 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 RPS9P46781 194 aaKnown RBP21.59■■□□□ 1.05
VPS29-206ENST00000549578 EIF3EP60228 445 aaKnown RBP21.59■■□□□ 1.05
VPS29-206ENST00000549578 E2F5Q15329 346 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 SIX1Q15475 284 aaPredicted RBP21.59■■□□□ 1.05
VPS29-206ENST00000549578 DLG2Q15700 870 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 CCDC13Q8IYE1 715 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 KDM1BQ8NB78 822 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 TTC13Q8NBP0 860 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 FRS2Q8WU20 508 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 ATG4AQ8WYN0 398 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 ZNF592Q92610 1267 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 CAPZA3Q96KX2 299 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 C10orf88Q9H8K7 445 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 C2orf42Q9NWW7 574 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 DLGAP2Q9P1A6 1054 aa21.59■■□□□ 1.05
VPS29-206ENST00000549578 CXorf51AA0A1B0GTR3 108 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 H7C0C1 242 aa21.58■■□□□ 1.04
VPS29-206ENST00000549578 PGRMC1O00264 195 aaKnown RBP21.58■■□□□ 1.04
VPS29-206ENST00000549578 EPHX1P07099 455 aa21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms