RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TTC27Q6P3X3 843 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 GSTA5Q7RTV2 222 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 ZNF354CQ86Y25 554 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 TERB1Q8NA31 727 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 OR7D4Q8NG98 312 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 ISG20Q96AZ6 181 aaKnown RBP16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 SPATA13Q96N96 652 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 RPP25Q9BUL9 199 aaKnown RBP16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 CEP44Q9C0F1 390 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 GTSE1Q9NYZ3 720 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 UBA2Q9UBT2 640 aaPredicted RBP16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 SEPT3Q9UH03 358 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 SLC25A13Q9UJS0 675 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 SLC8A2Q9UPR5 921 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 STARD13Q9Y3M8 1113 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 PRUNE2Q8WUY3 3088 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 EYSQ5T1H1 3165 aa16.34■□□□□ 0.21
PRPF40A-212ENST00000545856 TARSL2A2RTX5 802 aaKnown RBP16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 GOLGA6CA6NDK9 693 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 GOLGA6BA6NDN3 693 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 SGK1O00141 431 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 MAN2B1O00754 1011 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 KCNN4O15554 427 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 APODP05090 189 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 GOLGA6DP0CG33 693 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 CCNB1P14635 433 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 RBL1P28749 1068 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 CD70P32970 193 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 ACVRL1P37023 503 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 NNMTP40261 264 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 OPRD1P41143 372 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 MAPK8P45983 427 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 DRG2P55039 364 aaKnown RBP16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 C2orf54Q08AI8 447 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 PPP1R7Q15435 360 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 ALG1LQ6GMV1 187 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 JAMLQ86YT9 394 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 KLHL7Q8IXQ5 586 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 PLPP6Q8IY26 295 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 UBALD2Q8IYN6 164 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 PHTF2Q8N3S3 785 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 BBOF1Q8ND07 529 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 WFDC5Q8TCV5 224 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 BHMTQ93088 406 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 LRRC45Q96CN5 670 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 TEKT5Q96M29 485 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 PSKH2Q96QS6 385 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 TMEM121Q9BTD3 319 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 SPON2Q9BUD6 331 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 GOLGA6AQ9NYA3 693 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 VPS51Q9UID3 782 aa16.33■□□□□ 0.2
PRPF40A-212ENST00000545856 ERI2A8K979 691 aaKnown RBP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 RNF103O00237 685 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 CBX4O00257 560 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 NEBLO76041 1014 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 PEX11BO96011 259 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 DLDP09622 509 aaKnown RBP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 VAV1P15498 845 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 SP100P23497 879 aaPredicted RBP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 MZF1P28698 734 aaPredicted RBP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 CTHP32929 405 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 FDFT1P37268 417 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 TNFRSF4P43489 277 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 SERPINH1P50454 418 aaKnown RBP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 ECT2LQ008S8 904 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 PRKCQQ04759 706 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 NSUN2Q08J23 767 aaKnown RBP eCLIP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 SNX1Q13596 522 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 PCGF5Q86SE9 256 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 ADIPOR2Q86V24 386 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 EIF1ADQ8N9N8 165 aaKnown RBP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 OR52K2Q8NGK3 314 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 UTP11Q9Y3A2 253 aaKnown RBP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 NEU2Q9Y3R4 380 aa16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 MUC22E2RYF6 1773 aaPredicted RBP16.32■□□□□ 0.2
PRPF40A-212ENST00000545856 OTOL1A6NHN0 477 aaPredicted RBP16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 SPECC1L-ADORA2AF8WAN1 911 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 RIOK3O14730 519 aaKnown RBP16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 KAT7O95251 611 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 DRD1P21728 446 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 MCM3P25205 808 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 PTPN3P26045 913 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 PTGIRP43119 386 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 MMP13P45452 471 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 CSNK1DP48730 415 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 ARF5P84085 180 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 WASHC5Q12768 1159 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 ZNF235Q14590 738 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 LBRQ14739 615 aaKnown RBP16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 FUT11Q495W5 492 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 FBXO43Q4G163 708 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 MBLAC2Q68D91 279 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 ARHGEF18Q6ZSZ5 1173 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 FAM71DQ8N9W8 422 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 SEC14L1Q92503 715 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 UBXN4Q92575 508 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 ASB2Q96Q27 587 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 P2RY13Q9BPV8 354 aa16.31■□□□□ 0.2
PRPF40A-212ENST00000545856 ERP44Q9BS26 406 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms