RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 AHSGP02765 367 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 GSTA2P09210 222 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 TFEBP19484 476 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 FGFR3P22607 806 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 PIK3R1P27986 724 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CRABP2P29373 138 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 DPP6P42658 865 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 NME5P56597 212 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 SNX16P57768 344 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 SNX17Q15036 470 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 DCAF4L1Q3SXM0 396 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 EPGNQ6UW88 154 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 PDSS2Q86YH6 399 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 IFNLR1Q8IU57 520 aaPredicted RBP15.31■□□□□ 0.04
USP28-214ENST00000545540 LRRC52Q8N7C0 313 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CNTD1Q8N815 330 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 C3orf58Q8NDZ4 430 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 NPLOC4Q8TAT6 608 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 CNBD2Q96M20 576 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 SMOQ99835 787 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 ADARB2Q9NS39 739 aaKnown RBP15.31■□□□□ 0.04
USP28-214ENST00000545540 ARHGAP26Q9UNA1 814 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 PPP2R3BQ9Y5P8 575 aa15.31■□□□□ 0.04
USP28-214ENST00000545540 ATP6AP2A0A1C7CYW4 349 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 F8W810 466 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 XPO1O14980 1071 aaKnown RBP15.3■□□□□ 0.04
USP28-214ENST00000545540 ATP6AP2O75787 350 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 SBK3P0C264 359 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 GRK2P25098 689 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 SERPINB8P50452 374 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 BIRC2Q13490 618 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 GRTP1Q5TC63 336 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 TMCO4Q5TGY1 634 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 MFSD6LQ8IWD5 586 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 FSTL5Q8N475 847 aaPredicted RBP15.3■□□□□ 0.04
USP28-214ENST00000545540 KLHL4Q9C0H6 718 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 PLEKHA5Q9HAU0 1116 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 WDR6Q9NNW5 1121 aaKnown RBP15.3■□□□□ 0.04
USP28-214ENST00000545540 STAP1Q9ULZ2 295 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 PCDHB12Q9Y5F1 795 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 TRPA1O75762 1119 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 CSPG5O95196 566 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 AP2A1O95782 977 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 CNTFP26441 200 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 GLUD2P49448 558 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 CLCNKBP51801 687 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 CNGA3Q16281 694 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 ZNF789Q5FWF6 425 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 FBXO48Q5FWF7 155 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 ALKAL1Q6UXT8 129 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 TNIP3Q96KP6 325 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 FERMT1Q9BQL6 677 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 WDCPQ9H6R7 721 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 XPR1Q9UBH6 696 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 H3BNX3 289 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 MLNP12872 115 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 HARS2P49590 506 aaKnown RBP15.3■□□□□ 0.04
USP28-214ENST00000545540 CCNA1P78396 465 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 FOLH1Q04609 750 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 TMC7Q7Z402 723 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 DSELQ8IZU8 1212 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 ZMIZ2Q8NF64 920 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 ACTRT2Q8TDY3 377 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 PHF21BQ96EK2 531 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 HSFY1Q96LI6 401 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 ILKAPQ9H0C8 392 aaPredicted RBP15.3■□□□□ 0.04
USP28-214ENST00000545540 PCDHAC1Q9H158 963 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 MIOSQ9NXC5 875 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 GTSE1Q9NYZ3 720 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 SFMBT1Q9UHJ3 866 aa15.3■□□□□ 0.04
USP28-214ENST00000545540 DOCK3Q8IZD9 2030 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 PTGESO14684 152 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 FESP07332 822 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 MYL3P08590 195 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 FAM200BP0CF97 657 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 BDNFP23560 247 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 CNPY1Q3B7I2 92 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 PITRM1Q5JRX3 1037 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 PGM2L1Q6PCE3 622 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 ACMSDQ8TDX5 336 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 EXT2Q93063 718 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 DNAJC1Q96KC8 554 aaKnown RBP15.29■□□□□ 0.04
USP28-214ENST00000545540 BRD8Q9H0E9 1235 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 C1orf21Q9H246 121 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 HACD1B0YJ81 288 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 ACADSBP45954 432 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 NRF1Q16656 503 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 SPANXN3Q5MJ09 141 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 SMG8Q8ND04 991 aaKnown RBP15.29■□□□□ 0.04
USP28-214ENST00000545540 SENP8Q96LD8 212 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 TMEM209Q96SK2 561 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 COLEC11Q9BWP8 271 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 KATNBL1Q9H079 304 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 SPON1Q9HCB6 807 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 TNFRSF12AQ9NP84 129 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 MPP6Q9NZW5 540 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 WDR90Q96KV7 1748 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 BTBD19C9JJ37 291 aa15.29■□□□□ 0.04
USP28-214ENST00000545540 CCNT2O60583 730 aaKnown RBP15.29■□□□□ 0.04
USP28-214ENST00000545540 STAU1O95793 577 aaKnown RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms