RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 NTPCRQ9BSD7 190 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 HTATIP2Q9BUP3 242 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 SNTG2Q9NY99 539 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 NCKIPSDQ9NZQ3 722 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PCSK1NQ9UHG2 260 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 DENND3A2RUS2 1198 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 SYNDIG1LA6NDD5 238 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 CCDC160A6NGH7 325 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 H3BSA7 217 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TNFRSF10AO00220 468 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 MUSKO15146 869 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 LIASO43766 372 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 B4GALT4O60513 344 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GAS7O60861 476 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GPR32O75388 356 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PGK1P00558 417 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TIMP1P01033 207 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 MT-ND3P03897 115 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 KRT5P13647 590 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 CNTFP26441 200 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GNL1P36915 607 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 QARSP47897 775 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 KRT6CP48668 564 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 EPHB1P54762 984 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TUBA3CQ13748 450 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 C16orf72Q14CZ0 275 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 HSF5Q4G112 596 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 FSCBQ5H9T9 825 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 HP1BP3Q5SSJ5 553 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 LPCAT4Q643R3 524 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GDF6Q6KF10 455 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 AADACL2Q6P093 401 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GPR141Q7Z602 305 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GSTCDQ8NEC7 633 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 ANGPTL6Q8NI99 470 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 ACMSDQ8TDX5 336 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 SLC26A7Q8TE54 656 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 SHC3Q92529 594 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 RBM18Q96H35 190 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 CNDP1Q96KN2 507 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 YME1L1Q96TA2 773 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 ZNF302Q9NR11 478 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TAS2R14Q9NYV8 317 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 CRNNQ9UBG3 495 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 PPARGC1AQ9UBK2 798 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 ARHGAP26Q9UNA1 814 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 HEY1Q9Y5J3 304 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TDRD15B5MCY1 1934 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 CENPFP49454 3210 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 A0A1W2PPM1 405 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 M0QX08 132 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TRDMT1O14717 391 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 TGFB1I1O43294 461 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 AKAP10O43572 662 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PROSCO94903 275 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 FUCA1P04066 466 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 ADRB2P07550 413 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 MYCLP12524 364 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 JUNBP17275 347 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 NMT1P30419 496 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 TMBIM6P55061 237 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 GPX6P59796 221 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PDIA2Q13087 525 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 DCAF17Q5H9S7 520 aaPredicted RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 TEDDM1Q5T9Z0 273 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 FAM180BQ6P0A1 224 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 TRIM72Q6ZMU5 477 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 CYS1Q717R9 158 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 CATSPER3Q86XQ3 398 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PPIL6Q8IXY8 311 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 RCOR2Q8IZ40 523 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 CPSF7Q8N684 471 aaKnown RBP5.36□□□□□ -1.55
USP28-213ENST00000544967 C1orf54Q8WWF1 131 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 RASSF5Q8WWW0 418 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 ISOC1Q96CN7 298 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 MED30Q96HR3 178 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 FGFBP2Q9BYJ0 223 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 RIC8BQ9NVN3 520 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PCDHA12Q9UN75 941 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 SATB2Q9UPW6 733 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PLLPQ9Y342 182 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 PLXNA4Q9HCM2 1894 aa5.36□□□□□ -1.55
USP28-213ENST00000544967 C2orf81A6NN90 581 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 TTC34A8MYJ7 566 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 DYNC1LI2O43237 492 aaPredicted RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 ZC3H11AO75152 810 aaKnown RBP eCLIP5.35□□□□□ -1.55
USP28-213ENST00000544967 PIGRP01833 764 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 KRT6AP02538 564 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 KRT6BP04259 564 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 CLTBP09497 229 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 SEPHS1P49903 392 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 STAT5BP51692 787 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 RIPPLY1Q0D2K3 151 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 BFSP1Q12934 665 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 DSC3Q14574 896 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 HIF1AQ16665 826 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 LSM12Q3MHD2 195 aaKnown RBP5.35□□□□□ -1.55
USP28-213ENST00000544967 C6orf10Q5SRN2 563 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 PLA2G4FQ68DD2 849 aa5.35□□□□□ -1.55
USP28-213ENST00000544967 SWSAP1Q6NVH7 229 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms