RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 FAM20BO75063 409 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 AMD1P17707 334 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 POLR2EP19388 210 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 RPS6KA3P51812 740 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ERVK-21P61565 698 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 CYP51A1Q16850 503 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PHF13Q86YI8 300 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 GJD3Q8N144 294 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SLC30A5Q8TAD4 765 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF669Q96BR6 464 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 WDR18Q9BV38 432 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 IL22Q9GZX6 179 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ANKHQ9HCJ1 492 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TUBA8Q9NY65 449 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SQORQ9Y6N5 450 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 CHD2O14647 1828 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 EFCAB10A6NFE3 127 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PP2D1A8MPX8 630 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SMIM22K7EJ46 135 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PRMT5O14744 637 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 MPZL2O60487 215 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ATP9AO75110 1047 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 RECQL5O94762 991 aaPredicted RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 CCNG1P51959 295 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 FAM187BQ17R55 369 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ANXA8L1Q5VT79 327 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 AFTPHQ6ULP2 937 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 SAPCD2Q86UD0 394 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 NRSN1Q8IZ57 195 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PNPT1Q8TCS8 783 aaKnown RBP7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ADAM2Q99965 735 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 RUSC1Q9BVN2 902 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 ELOVL4Q9GZR5 314 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PLGRKTQ9HBL7 147 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 PLK2Q9NYY3 685 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 TBC1D30Q9Y2I9 924 aa7.94□□□□□ -1.14
VPS13D-211ENST00000543710 CCDC189A1A4V9 331 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 UGT2B11O75310 529 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 BCL10O95999 233 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 SERPINA6P08185 405 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 NEK3P51956 506 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 INTS6LQ5JSJ4 861 aaKnown RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ESRP1Q6NXG1 681 aaKnown RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 RASGEF1CQ8N431 466 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ZFP28Q8NHY6 868 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 FAM163AQ96GL9 167 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 AGBL1Q96MI9 1066 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CORO1BQ9BR76 489 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 RTKNQ9BST9 563 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 SARS2Q9NP81 518 aaKnown RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 KRT84Q9NSB2 600 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 STOML2Q9UJZ1 356 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 HBS1LQ9Y450 684 aaKnown RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 TRIM38O00635 465 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CBFA2T3O75081 653 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 PSMG1O95456 288 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ECDO95905 644 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 DGKAP23743 735 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CYP2F1P24903 491 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 PRIM2P49643 509 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 SLC12A3P55017 1021 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 GRIK3Q13003 919 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 C2orf27AQ580R0 203 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ZRANB3Q5FWF4 1079 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 NOMO2Q5JPE7 1267 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 SMIM5Q71RC9 77 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ALLCQ8N6M5 410 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 HIPK4Q8NE63 616 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 TRIM8Q9BZR9 551 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CLPBQ9H078 707 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 RPRD1BQ9NQG5 326 aaKnown RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 USE1Q9NZ43 259 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 POLLQ9UGP5 575 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 DNAJC16Q9Y2G8 782 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 SNX9Q9Y5X1 595 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CNTNAP2Q9UHC6 1331 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 DDTLA6NHG4 134 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 PRR5-ARHGAP8B1AHC4 643 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 USP17L7P0C7H9 530 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 UMPSP11172 480 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 IMPDH2P12268 514 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 GYS2P54840 703 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CAMK2GQ13555 558 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 E2F4Q16254 413 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF284Q2VY69 593 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 PCID2Q5JVF3 399 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 DENND1BQ6P3S1 775 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 DENND5BQ6ZUT9 1274 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF572Q7Z3I7 529 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ARHGAP22Q7Z5H3 698 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 CAMK1DQ8IU85 385 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 NPAS4Q8IUM7 802 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 C4orf33Q8N1A6 199 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 USP33Q8TEY7 942 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 HIC2Q96JB3 615 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 ZNF670Q9BS34 389 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 RACGAP1Q9H0H5 632 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 COPS7BQ9H9Q2 264 aaPredicted RBP7.93□□□□□ -1.14
VPS13D-211ENST00000543710 TCF7L2Q9NQB0 619 aa7.93□□□□□ -1.14
VPS13D-211ENST00000543710 NINJ2Q9NZG7 142 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms