RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 FMR1NBQ8N0W7 255 aaPredicted RBP18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 FAM181AQ8N9Y4 354 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 EHBP1Q8NDI1 1231 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 OR2A12Q8NGT7 310 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 SPATA20Q8TB22 786 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 SCAND2PQ9GZW5 306 aaPredicted RBP18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 OSBPL2Q9H1P3 480 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 FAM204AQ9H8W3 233 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 GDPD2Q9HCC8 539 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 ACP6Q9NPH0 428 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 GPR27Q9NS67 375 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 SLC12A6Q9UHW9 1150 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 VPS28Q9UK41 221 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 VANGL2Q9ULK5 521 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 HS3ST2Q9Y278 367 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 SCN8AQ9UQD0 1980 aa18.27■□□□□ 0.52
CLSTN3-214ENST00000542663 SYNJ2BP-COX16A0A087WUM0 186 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 KPNA3O00505 521 aaPredicted RBP18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 SCAMP1O15126 338 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 P4HA2O15460 535 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 KLK10O43240 276 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 NEBLO76041 1014 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 SLC2A3P11169 496 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 CCR1P32246 355 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 ZNF542PQ5EBM4 170 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 DEFB106AQ8N104 65 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 ZNF606Q8WXB4 792 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 IFT43Q96FT9 208 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 VCPIP1Q96JH7 1222 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 CEP63Q96MT8 703 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 SLC2A13Q96QE2 648 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 MED15Q96RN5 788 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 PPP1R9BQ96SB3 815 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 PSMB7Q99436 277 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 DDIT4Q9NX09 232 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 COX16Q9P0S2 106 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 TBC1D30Q9Y2I9 924 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 HS3ST4Q9Y661 456 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 LRRK1Q38SD2 2015 aa18.26■□□□□ 0.51
CLSTN3-214ENST00000542663 PIEZO2Q9H5I5 2752 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 K7ERQ8 282 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 K7ESM1 405 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 LETM1O95202 739 aaPredicted RBP18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 ALPPL2P10696 532 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 KRT5P13647 590 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 CD44P16070 742 aaKnown RBP18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 TGM2P21980 687 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 AKT2P31751 481 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 CHRNA3P32297 505 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 SKOR1P84550 965 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 ZNF177Q13360 481 aaPredicted RBP18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 PDCLQ13371 301 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 ISXQ2M1V0 245 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 C5orf22Q49AR2 442 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 CCDC40Q4G0X9 1142 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 TMEM259Q4ZIN3 620 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 SEL1L3Q68CR1 1132 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 OR6B2Q6IFH4 312 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 IGF2-ASQ6U949 168 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 C14orf80Q86SX3 495 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 CHST14Q8NCH0 376 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 TMIEQ8NEW7 156 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 IFI44Q8TCB0 444 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 BMFQ96LC9 184 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 DPH1Q9BZG8 443 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 SATB2Q9UPW6 733 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 LRP4O75096 1905 aa18.25■□□□□ 0.51
CLSTN3-214ENST00000542663 B8ZZF3 427 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 PYCARD-AS1I3L0S3 204 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 SMAD6O43541 496 aaKnown RBP18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 SNAP91O60641 907 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 CNTN5O94779 1100 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 CDK17Q00537 523 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 VAC14Q08AM6 782 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 CETN1Q12798 172 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 FGL2Q14314 439 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 FZD2Q14332 565 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 C3orf38Q5JPI3 329 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 Q6ZSR6 202 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 RNF34Q969K3 372 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 PRR11Q96HE9 360 aaPredicted RBP18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 CCDC34Q96HJ3 373 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 ABCG4Q9H172 646 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 USP29Q9HBJ7 922 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 THSD1Q9NS62 852 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 DNAJC28Q9NX36 388 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 VPS51Q9UID3 782 aa18.24■□□□□ 0.51
CLSTN3-214ENST00000542663 PMS2P1A4D2B8 440 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 POM121BA6NF01 834 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 NEMP2A6NFY4 417 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 A6NNZ2 444 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 MED7O43513 233 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 PAGE1O75459 146 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 CLDN11O75508 207 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 GRAP2O75791 330 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 PCDH8O95206 1070 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 C6P13671 934 aa18.23■□□□□ 0.51
CLSTN3-214ENST00000542663 RRM1P23921 792 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms