RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 ZDHHC7Q9NXF8 308 aa12.76□□□□□ -0.37
RNF4-222ENST00000541204 CPSF2Q9P2I0 782 aaKnown RBP12.76□□□□□ -0.37
RNF4-222ENST00000541204 RPS6KL1Q9Y6S9 549 aa12.76□□□□□ -0.37
RNF4-222ENST00000541204 SF3B1O75533 1304 aaKnown RBP eCLIP12.76□□□□□ -0.371e-6■■■■■ 109.1
RNF4-222ENST00000541204 ZBTB14O43829 449 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 OPHN1O60890 802 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 CD1EP15812 388 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 RAG1P15918 1043 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 ERCC2P18074 760 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 ADRA1BP35368 520 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 HARS2P49590 506 aaKnown RBP12.75□□□□□ -0.37
RNF4-222ENST00000541204 CACNB2Q08289 660 aaPredicted RBP12.75□□□□□ -0.37
RNF4-222ENST00000541204 DLG1Q12959 904 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 IRF5Q13568 498 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 TRIP10Q15642 601 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 UPP1Q16831 310 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 LIN52Q52LA3 116 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 NAPRTQ6XQN6 538 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 PID1Q7Z2X4 250 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 DCLK2Q8N568 766 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 KCTD13Q8WZ19 329 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 AZIN2Q96A70 460 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 FCRL3Q96P31 734 aaPredicted RBP12.75□□□□□ -0.37
RNF4-222ENST00000541204 TMLHEQ9NVH6 421 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 PACSIN3Q9UKS6 424 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 GPR182O15218 404 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 LTFP02788 710 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 POLBP06746 335 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 SLC10A3P09131 477 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 UQCRBP14927 111 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 MX2P20592 715 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 ABCG1P45844 678 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 TPI1P60174 286 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 BIRC2Q13490 618 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 INSCQ1MX18 579 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 SLC9B1Q4ZJI4 515 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 FBXW8Q8N3Y1 598 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 SCAMP5Q8TAC9 235 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 NT5C3BQ969T7 300 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 CERS2Q96G23 380 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 SLC2A13Q96QE2 648 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 RTP3Q9BQQ7 232 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 SPATA16Q9BXB7 569 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 ZCWPW1Q9H0M4 648 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 FAM96AQ9H5X1 160 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 NUDT5Q9UKK9 219 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 ZNF236Q9UL36 1845 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 HACD1B0YJ81 288 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 IGHA2P01877 340 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 SRGAP2BP0DMP2 458 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 MYL4P12829 197 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 COX4I1P13073 169 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 GP5P40197 560 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 ST13P4Q8IZP2 240 aaPredicted RBP12.75□□□□□ -0.37
RNF4-222ENST00000541204 ZNF567Q8N184 647 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 MAPK15Q8TD08 544 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 JADE3Q92613 823 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 MOCOSQ96EN8 888 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 CELF6Q96J87 481 aaKnown RBP12.75□□□□□ -0.37
RNF4-222ENST00000541204 TSPAN18Q96SJ8 248 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 SIK2Q9H0K1 926 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 CAB39LQ9H9S4 337 aa12.75□□□□□ -0.37
RNF4-222ENST00000541204 WDR6Q9NNW5 1121 aaKnown RBP12.75□□□□□ -0.37
RNF4-222ENST00000541204 KLHL8Q9P2G9 620 aaPredicted RBP12.75□□□□□ -0.37
RNF4-222ENST00000541204 ZNF638Q14966 1978 aaKnown RBP12.74□□□□□ -0.37
RNF4-222ENST00000541204 STK10O94804 968 aaKnown RBP12.74□□□□□ -0.37
RNF4-222ENST00000541204 HSPA4LO95757 839 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 VCLP18206 1134 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 FCGRTP55899 365 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 IRF9Q00978 393 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 DLG2Q15700 870 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 NPWQ8N729 165 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 OR52K1Q8NGK4 314 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 PPP1R36Q96LQ0 422 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 AGAP2Q99490 1192 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 APOL2Q9BQE5 337 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 CENPKQ9BS16 269 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 TKTL2Q9H0I9 626 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 ACSS2Q9NR19 701 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 EIF2B3Q9NR50 452 aaKnown RBP12.74□□□□□ -0.37
RNF4-222ENST00000541204 UBP1Q9NZI7 540 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 H3BNX3 289 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 TXNDC9O14530 226 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 OR4Q2P0C623 313 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 ETS2P15036 469 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 GARSP41250 739 aaKnown RBP12.74□□□□□ -0.37
RNF4-222ENST00000541204 GRIA2P42262 883 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 NAB1Q13506 487 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 DPYSQ14117 519 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 PDK1Q15118 436 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 CCDC153Q494R4 210 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 MMEL1Q495T6 779 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 EPGNQ6UW88 154 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 STRA8Q7Z7C7 330 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 LRRTM3Q86VH5 581 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 TMEM86AQ8N2M4 240 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 SMARCD1Q96GM5 515 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 CPNE1Q99829 537 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 COLEC11Q9BWP8 271 aa12.74□□□□□ -0.37
RNF4-222ENST00000541204 CDH19Q9H159 772 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms