RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CFLARO15519 480 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 SNNO75324 88 aaPredicted RBP17.21■□□□□ 0.35
USP28-208ENST00000540438 AHSGP02765 367 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 TSHRP16473 764 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 GNAZP19086 355 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 IDH3AP50213 366 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 SERPINB9P50453 376 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 CEP97Q8IW35 865 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 PANX3Q96QZ0 392 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 MYCBPQ99417 103 aaPredicted RBP17.21■□□□□ 0.35
USP28-208ENST00000540438 SUDS3Q9H7L9 328 aaPredicted RBP17.21■□□□□ 0.35
USP28-208ENST00000540438 CNGB3Q9NQW8 809 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 SAR1AQ9NR31 198 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 KCNK4Q9NYG8 393 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 TSR3Q9UJK0 312 aaKnown RBP17.21■□□□□ 0.35
USP28-208ENST00000540438 KCTD3Q9Y597 815 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 HACD1B0YJ81 288 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 J3KR12 359 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 SIN3BO75182 1162 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 GLRA3O75311 464 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 DDHD2O94830 711 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 HNRNPLP14866 589 aaKnown RBP eCLIP17.21■□□□□ 0.35
USP28-208ENST00000540438 TCN1P20061 433 aaPredicted RBP17.21■□□□□ 0.35
USP28-208ENST00000540438 EFEMP1Q12805 493 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 CUL3Q13618 768 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 RASAL3Q86YV0 1011 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 MFSD6LQ8IWD5 586 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 ATPAF2Q8N5M1 289 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 MTBPQ96DY7 904 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 C7orf26Q96N11 449 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 RBBP8Q99708 897 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 SENP6Q9GZR1 1112 aaPredicted RBP17.21■□□□□ 0.35
USP28-208ENST00000540438 MYO7AQ13402 2215 aa17.21■□□□□ 0.35
USP28-208ENST00000540438 GOLGA8CPA6NN73 597 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 AIM2O14862 343 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 ZBTB14O43829 449 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 ALDH1A2O94788 518 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 CDC42EP1Q00587 391 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 C17orf99Q6UX52 265 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 KBTBD2Q8IY47 623 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 ULK2Q8IYT8 1036 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 KCTD13Q8WZ19 329 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 FRMD8Q9BZ67 464 aaPredicted RBP17.21■□□□□ 0.34
USP28-208ENST00000540438 SLC24A3Q9HC58 644 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 PPM1HQ9ULR3 514 aa17.21■□□□□ 0.34
USP28-208ENST00000540438 CAPN14A8MX76 684 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 PPIDQ08752 370 aaKnown RBP17.2■□□□□ 0.34
USP28-208ENST00000540438 SEMA3BQ13214 749 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 LIMS2Q7Z4I7 341 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 HPS6Q86YV9 775 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 SPATA2LQ8IUW3 424 aaPredicted RBP17.2■□□□□ 0.34
USP28-208ENST00000540438 SCUBE1Q8IWY4 988 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 CFAP52Q8N1V2 620 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 MAGEC3Q8TD91 643 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 SCG3Q8WXD2 468 aaKnown RBP17.2■□□□□ 0.34
USP28-208ENST00000540438 NXNL1Q96CM4 212 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 NT5MQ9NPB1 228 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 ABT1Q9ULW3 272 aaKnown RBP17.2■□□□□ 0.34
USP28-208ENST00000540438 MAP3K13O43283 966 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 PSMG1O95456 288 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 HLA-DQB2P05538 268 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 PSMD5Q16401 504 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 STEAP4Q687X5 459 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 CD300LGQ6UXG3 332 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 PTAR1Q7Z6K3 402 aaPredicted RBP17.2■□□□□ 0.34
USP28-208ENST00000540438 IFNL1Q8IU54 200 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 RYBPQ8N488 228 aaPredicted RBP17.2■□□□□ 0.34
USP28-208ENST00000540438 BHMTQ93088 406 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 TEKT5Q96M29 485 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 MTG1Q9BT17 334 aaPredicted RBP17.2■□□□□ 0.34
USP28-208ENST00000540438 KATNAL1Q9BW62 490 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 CCDC106Q9BWC9 280 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 GATA5Q9BWX5 397 aaPredicted RBP17.2■□□□□ 0.34
USP28-208ENST00000540438 FSD1LQ9BXM9 530 aa17.2■□□□□ 0.34
USP28-208ENST00000540438 ABCE1P61221 599 aaKnown RBP17.19■□□□□ 0.34
USP28-208ENST00000540438 LPIN1Q14693 890 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 RBM20Q5T481 1227 aaKnown RBP17.19■□□□□ 0.34
USP28-208ENST00000540438 PDPK2PQ6A1A2 396 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 TAF2Q6P1X5 1199 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 SCD5Q86SK9 330 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 KLHDC9Q8NEP7 349 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 SLC26A7Q8TE54 656 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 USP13Q92995 863 aaPredicted RBP17.19■□□□□ 0.34
USP28-208ENST00000540438 SLC45A3Q96JT2 553 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 GBA3Q9H227 469 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 IGSF9Q9P2J2 1179 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 LNPEPQ9UIQ6 1025 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 CDH9Q9ULB4 789 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 TGDSO95455 350 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 HAPLN1P10915 354 aaPredicted RBP17.19■□□□□ 0.34
USP28-208ENST00000540438 PCSK1P29120 753 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 SPRP35270 261 aaPredicted RBP17.19■□□□□ 0.34
USP28-208ENST00000540438 PTPRRQ15256 657 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 ALFQ53S48 1182 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 INTS6LQ5JSJ4 861 aaKnown RBP17.19■□□□□ 0.34
USP28-208ENST00000540438 ZNF470Q6ECI4 717 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 FRMD7Q6ZUT3 714 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 METTL23Q86XA0 190 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 PHF21BQ96EK2 531 aa17.19■□□□□ 0.34
USP28-208ENST00000540438 MYEOVQ96EZ4 313 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms