RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 POLD3Q15054 466 aaPredicted RBP13.26□□□□□ -0.29
VPS28-216ENST00000533806 KCNT1Q5JUK3 1230 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 RETSATQ6NUM9 610 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 Q6ZVU0 165 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 USP30Q70CQ3 517 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 POLNQ7Z5Q5 900 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 PLPP6Q8IY26 295 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 CCDC170Q8IYT3 715 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 ATP11CQ8NB49 1132 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 CADM4Q8NFZ8 388 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 SLC35G2Q8TBE7 412 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 TSC1Q92574 1164 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 ISG20Q96AZ6 181 aaKnown RBP13.26□□□□□ -0.29
VPS28-216ENST00000533806 ANP32EQ9BTT0 268 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 CEP44Q9C0F1 390 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 CATSPERBQ9H7T0 1116 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 TMEM74BQ9NUR3 256 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 CTTNBP2NLQ9P2B4 639 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 SERGEFQ9UGK8 458 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 LCMT1Q9UIC8 334 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 PILRBQ9UKJ0 227 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 SARDHQ9UL12 918 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 ACTL7AQ9Y615 435 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 SPTBN4Q9H254 2564 aa13.26□□□□□ -0.29
VPS28-216ENST00000533806 DCHS1Q96JQ0 3298 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 RNF103O00237 685 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 EEF2KO00418 725 aaKnown RBP13.25□□□□□ -0.29
VPS28-216ENST00000533806 MID1O15344 667 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 RNASEH1O60930 286 aaKnown RBP13.25□□□□□ -0.29
VPS28-216ENST00000533806 CTSLP07711 333 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 ERCC2P18074 760 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 SLC8A1P32418 973 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 ACSL1P33121 698 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 MAN1A1P33908 653 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 DRD3P35462 400 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 MPLP40238 635 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 DHPSP49366 369 aaPredicted RBP13.25□□□□□ -0.29
VPS28-216ENST00000533806 NDST2P52849 883 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 METAP1P53582 386 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 ZNF33AQ06730 810 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 PARP15Q460N3 678 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 ACCSLQ4AC99 568 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 IL31Q6EBC2 164 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 C22orf39Q6P5X5 142 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 CACUL1Q86Y37 369 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 MMAAQ8IVH4 418 aaKnown RBP13.25□□□□□ -0.29
VPS28-216ENST00000533806 ARHGAP12Q8IWW6 846 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 KIAA2013Q8IYS2 634 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 AADATQ8N5Z0 425 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 DNASE2BQ8WZ79 361 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 PCED1AQ9H1Q7 454 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 VPS45Q9NRW7 570 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 CEP250Q9BV73 2442 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 CHD5Q8TDI0 1954 aa13.25□□□□□ -0.29
VPS28-216ENST00000533806 SPAG17Q6Q759 2223 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 DNAH14Q0VDD8 3507 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 METTL12A8MUP2 240 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 RASA4BC9J798 803 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 RASA4O43374 803 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 ADH1BP00325 375 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 C5AR1P21730 350 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 ITPKAP23677 461 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 HOXD12P35452 270 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 ARHGAP25P42331 645 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 HADHBP55084 474 aaKnown RBP13.24□□□□□ -0.29
VPS28-216ENST00000533806 TAS2R40P59535 323 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 CREB5Q02930 508 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 CCDC6Q16204 474 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 SMTNL2Q2TAL5 461 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 ATP13A4Q4VNC1 1196 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 PPP6R3Q5H9R7 873 aaPredicted RBP13.24□□□□□ -0.29
VPS28-216ENST00000533806 LYSMD4Q5XG99 296 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 PRR23CQ6ZRP0 262 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 SYT12Q8IV01 421 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 TMEM139Q8IV31 216 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 RHOT2Q8IXI1 618 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 DEFB119Q8N690 84 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 PCDH20Q8N6Y1 951 aaKnown RBP13.24□□□□□ -0.29
VPS28-216ENST00000533806 NPWQ8N729 165 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 TMIEQ8NEW7 156 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 C1orf216Q8TAB5 229 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 RFFLQ8WZ73 363 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 OR8D1Q8WZ84 308 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 FOXJ1Q92949 421 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 HMCESQ96FZ2 354 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 CSPG4P5Q96PW8 444 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 HINFPQ9BQA5 517 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 GPR174Q9BXC1 333 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 SLC39A8Q9C0K1 460 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 NEUROG2Q9H2A3 272 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 ZWILCHQ9H900 591 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 PDFQ9HBH1 243 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 PCDH18Q9HCL0 1135 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS28-216ENST00000533806 ETNK2Q9NVF9 386 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 FBXL12Q9NXK8 326 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 DONSONQ9NYP3 566 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 FZD4Q9ULV1 537 aa13.24□□□□□ -0.29
VPS28-216ENST00000533806 ZSCAN5CA6NGD5 496 aaPredicted RBP13.23□□□□□ -0.29
VPS28-216ENST00000533806 FOXD2O60548 495 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms