RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PSMD6Q15008 389 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 TRIP13Q15645 432 aaPredicted RBP8.49□□□□□ -1.05
NEDD8-207ENST00000533242 MON1BQ7L1V2 547 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 CADM4Q8NFZ8 388 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 EPS8L3Q8TE67 593 aaKnown RBP8.49□□□□□ -1.05
NEDD8-207ENST00000533242 SETD7Q8WTS6 366 aaKnown RBP8.49□□□□□ -1.05
NEDD8-207ENST00000533242 COL26A1Q96A83 441 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 BBC3Q96PG8 261 aaPredicted RBP8.49□□□□□ -1.05
NEDD8-207ENST00000533242 CGRRF1Q99675 332 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 KLF16Q9BXK1 252 aaPredicted RBP8.49□□□□□ -1.05
NEDD8-207ENST00000533242 SLC6A17Q9H1V8 727 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 CD93Q9NPY3 652 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.49□□□□□ -1.052e-10■■■■■ 55.6
NEDD8-207ENST00000533242 WSB2Q9NYS7 404 aaPredicted RBP8.49□□□□□ -1.05
NEDD8-207ENST00000533242 GMIPQ9P107 970 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 USP36Q9P275 1121 aaKnown RBP8.49□□□□□ -1.05
NEDD8-207ENST00000533242 UVRAGQ9P2Y5 699 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 RAD54BQ9Y620 910 aa8.49□□□□□ -1.05
NEDD8-207ENST00000533242 A8MXQ7 604 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 PRRT4C9JH25 899 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 NEDD8-MDP1E9PL57 170 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 GREM1O60565 184 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 CST3P01034 146 aaPredicted RBP8.48□□□□□ -1.05
NEDD8-207ENST00000533242 CYP1A1P04798 512 aaPredicted RBP8.48□□□□□ -1.05
NEDD8-207ENST00000533242 NUDT17P0C025 328 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 CISD3P0C7P0 127 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 NCAM1P13591 858 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 TYRP14679 529 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 OXTRP30559 389 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 CHKAP35790 457 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 PIK3CAP42336 1068 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 SLCO1A2P46721 670 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 SLC5A3P53794 718 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 RWDD2BP57060 319 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 TAS2R40P59535 323 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 PPP2R2AP63151 447 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ADCY2Q08462 1091 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 BIRC3Q13489 604 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 AGBL2Q5U5Z8 902 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 DBX2Q6ZNG2 339 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 FAM35AQ86V20 835 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 SCUBE3Q8IX30 993 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 GALNT15Q8N3T1 639 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ZCCHC9Q8N567 271 aaKnown RBP8.48□□□□□ -1.05
NEDD8-207ENST00000533242 SCAMP5Q8TAC9 235 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 RAPGEF5Q92565 580 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 LRIG1Q96JA1 1093 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 C11orf70Q9BRQ4 267 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 BBS2Q9BXC9 721 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 HEMGNQ9BXL5 484 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 NACA2Q9H009 215 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 DMAP1Q9NPF5 467 aaPredicted RBP8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ITM2CQ9NQX7 267 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 CACNA2D2Q9NY47 1150 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 LSM7Q9UK45 103 aaKnown RBP8.48□□□□□ -1.05
NEDD8-207ENST00000533242 SHROOM3Q8TF72 1996 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 TLDC2A0PJX2 215 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 E9PAM4 449 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 NPC1O15118 1278 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 FLRT2O43155 660 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 CILPO75339 1184 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 FAM107AO95990 144 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 IVDP26440 423 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ATICP31939 592 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 DGKGP49619 791 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ZNF132P52740 706 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 NOMO3P69849 1222 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 CENPCQ03188 943 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 IFFO1Q0D2I5 559 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 SF3A3Q12874 501 aaKnown RBP eCLIP8.48□□□□□ -1.05
NEDD8-207ENST00000533242 PTP4A2Q12974 167 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 STARD3Q14849 445 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ATP13A4Q4VNC1 1196 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ODF2Q5BJF6 829 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 TMEM270Q6UE05 265 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ART4Q93070 314 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 SMARCD1Q96GM5 515 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 TOE1Q96GM8 510 aaKnown RBP8.48□□□□□ -1.05
NEDD8-207ENST00000533242 KCNK16Q96T55 309 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 MED10Q9BTT4 135 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 GAREM1Q9H706 876 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 PRDM16Q9HAZ2 1276 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 IL21RQ9HBE5 538 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 TM7SF3Q9NS93 570 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 KLHL11Q9NVR0 708 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 TOR4AQ9NXH8 423 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 STON1Q9Y6Q2 735 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 ZZEF1O43149 2961 aa8.48□□□□□ -1.05
NEDD8-207ENST00000533242 A0A087WV48 116 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 METTL12A8MUP2 240 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 BCAT2O15382 392 aaPredicted RBP8.47□□□□□ -1.05
NEDD8-207ENST00000533242 RIPK2O43353 540 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 IGLV3-19P01714 112 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 VPS41P49754 854 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 BNC1Q01954 994 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 CUL2Q13617 745 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 E2F5Q15329 346 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 PPP2R5EQ16537 467 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 WDR72Q3MJ13 1102 aa8.47□□□□□ -1.05
NEDD8-207ENST00000533242 CCDC38Q502W7 563 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms