RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	SETD1B	Q9UPS6	1966 aa	Known RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	DYTN	A2CJ06	578 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	WDR27	A2RRH5	827 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	TRIM64	A6NGJ6	449 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	TRIM64B	A6NI03	449 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	OR6C65	A6NJZ3	312 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	CETN3	O15182	167 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	YY2	O15391	372 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ATP6V1G2	O95670	118 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	GZMA	P12544	262 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	NAGA	P17050	411 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	CD6	P30203	668 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ADRA1B	P35368	520 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	HAL	P42357	657 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	CCT5	P48643	541 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	PXN	P49023	591 aa	Predicted RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	CENPA	P49450	140 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ZNF75D	P51815	510 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	UCP3	P55916	312 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	EVC	P57679	992 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	BPIFB3	P59826	476 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	UBE2H	P62256	183 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	FOXI1	Q12951	378 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	BOP1	Q14137	746 aa	Known RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	GSTA3	Q16772	222 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ANKDD1A	Q495B1	522 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	SPECC1	Q5M775	1068 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	RBM20	Q5T481	1227 aa	Known RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	PPP4R4	Q6NUP7	873 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ZNF449	Q6P9G9	518 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	LAYN	Q6UX15	382 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ANGPTL8	Q6UXH0	198 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	SLC30A10	Q6XR72	485 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	RASGRP2	Q7LDG7	609 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	CATSPER4	Q7RTX7	472 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	NKAIN4	Q8IVV8	208 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	C17orf53	Q8N3J3	647 aa	Predicted RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	DNAJC5G	Q8N7S2	189 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	LSMEM1	Q8N8F7	131 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	PCSK9	Q8NBP7	692 aa	Known RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	B3GALNT2	Q8NCR0	500 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	SLC30A5	Q8TAD4	765 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ENKUR	Q8TC29	256 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	BCAS4	Q8TDM0	211 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	FBXO41	Q8TF61	875 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ATP8B4	Q8TF62	1192 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	AFG1L	Q8WV93	481 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	FAM136A	Q96C01	138 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	INTS12	Q96CB8	462 aa	Known RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	RRP36	Q96EU6	259 aa	Known RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	HIC2	Q96JB3	615 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	TNIP3	Q96KP6	325 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	CCDC138	Q96M89	665 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	NUP58	Q9BVL2	599 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	MRI	Q9BWK5	157 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	AMBRA1	Q9C0C7	1298 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	INTS2	Q9H0H0	1204 aa	Known RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	BICC1	Q9H694	974 aa	Known RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	NOD2	Q9HC29	1040 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	PDE11A	Q9HCR9	933 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	XPNPEP3	Q9NQH7	507 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	EURL	Q9NYK6	297 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	EMC3	Q9P0I2	261 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	DBF4	Q9UBU7	674 aa	Predicted RBP	5.84	□□□□□ -1.47
CD44-231	ENST00000531110	TRIM17	Q9Y577	477 aa		5.84	□□□□□ -1.47
CD44-231	ENST00000531110	ABCC2	Q92887	1545 aa		5.84	□□□□□ -1.48
CD44-231	ENST00000531110	NKTR	P30414	1462 aa	Known RBP	5.83	□□□□□ -1.48
CD44-231	ENST00000531110	GRIN2A	Q12879	1464 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	YTHDC2	Q9H6S0	1430 aa	Known RBP	5.83	□□□□□ -1.48
CD44-231	ENST00000531110	KIAA0232	Q92628	1395 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	MYO3B	Q8WXR4	1341 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	ZNF521	Q96K83	1311 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	C17orf113	A0A1B0GUU1	675 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	SYCE1L	A8MT33	242 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	RSPH10B2	B2RC85	870 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	GOLGA8R	I6L899	631 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	RNF113A	O15541	343 aa	Known RBP	5.83	□□□□□ -1.48
CD44-231	ENST00000531110	EXTL3	O43909	919 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	VPS4B	O75351	444 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	SLITRK3	O94933	977 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	ANP32D	O95626	131 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	KRT14	P02533	472 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	LMNA	P02545	664 aa	Known RBP	5.83	□□□□□ -1.48
CD44-231	ENST00000531110	RSPH10B	P0C881	870 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	DLAT	P10515	647 aa	Known RBP	5.83	□□□□□ -1.48
CD44-231	ENST00000531110	TRIM27	P14373	513 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	ACADS	P16219	412 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	PPP3CB	P16298	524 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	KLRC1	P26715	233 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	PSMC2	P35998	433 aa	Known RBP	5.83	□□□□□ -1.48
CD44-231	ENST00000531110	GNAL	P38405	381 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	HSPA9	P38646	679 aa	Known RBP	5.83	□□□□□ -1.48
CD44-231	ENST00000531110	CBX5	P45973	191 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	ZNF134	P52741	427 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	HMGA2	P52926	109 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	CTBP1	Q13363	440 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	SHROOM1	Q2M3G4	852 aa	Predicted RBP	5.83	□□□□□ -1.48
CD44-231	ENST00000531110	BMP2KL	Q5H9B9	411 aa		5.83	□□□□□ -1.48
CD44-231	ENST00000531110	METTL11B	Q5VVY1	283 aa		5.83	□□□□□ -1.48

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms