RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PARVAQ9NVD7 372 aa11.76□□□□□ -0.53
VCAN-212ENST00000515397 PPARGC1AQ9UBK2 798 aaKnown RBP11.76□□□□□ -0.53
VCAN-212ENST00000515397 CAPN11Q9UMQ6 739 aa11.76□□□□□ -0.53
VCAN-212ENST00000515397 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.76□□□□□ -0.53
VCAN-212ENST00000515397 TPRP12270 2363 aaKnown RBP11.76□□□□□ -0.53
VCAN-212ENST00000515397 PLXND1Q9Y4D7 1925 aa11.76□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3DA0A087WVF3 549 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3IA0A087WXS9 549 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3EA0A087X179 549 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3KA0A087X1G2 549 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 A0A1B0GTW7 788 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3FA6NER0 549 aaPredicted RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 TMEM191CA6NGB0 347 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3LB9A6J9 549 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 BCAT2O15382 392 aaPredicted RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 ZNF821O75541 412 aaPredicted RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 KCNK5O95279 499 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 CD160O95971 181 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 IGHV4-34P06331 123 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3HP0C7X1 549 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 GNSP15586 552 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 RHOQP17081 205 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 GOT1P17174 413 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 EPHB2P29323 1055 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 MAT2AP31153 395 aaKnown RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 GKP32189 559 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 ARF5P84085 180 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 ZBED6P86452 979 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 CNTN1Q12860 1018 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 GRIK2Q13002 908 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 ELAVL3Q14576 367 aaKnown RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 ARSIQ5FYB1 569 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 FIGNQ5HY92 759 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 EFHC2Q5JST6 749 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 KCNT1Q5JUK3 1230 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 N4BP2L1Q5TBK1 243 aaPredicted RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 KIAA0895LQ68EN5 471 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3GQ6DHY5 549 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3CQ6IPX1 549 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 PSAPL1Q6NUJ1 521 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 DPY19L3Q6ZPD9 716 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 ZNF354CQ86Y25 554 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TBC1D3Q8IZP1 549 aaPredicted RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 DCAF4L2Q8NA75 395 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 DEFB124Q8NES8 71 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 OR2A12Q8NGT7 310 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 OR6K2Q8NGY2 324 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 C1orf216Q8TAB5 229 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 GRIN3AQ8TCU5 1115 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 KLK6Q92876 244 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 ARHGEF2Q92974 986 aaKnown RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 NTAN1Q96AB6 310 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 VCPIP1Q96JH7 1222 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 CAMK1GQ96NX5 476 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 TM6SF2Q9BZW4 377 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 DHX35Q9H5Z1 703 aaKnown RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 NOL6Q9H6R4 1146 aaKnown RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 TM9SF3Q9HD45 589 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 PPM1HQ9ULR3 514 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 HS3ST2Q9Y278 367 aa11.75□□□□□ -0.53
VCAN-212ENST00000515397 LUC7L2Q9Y383 392 aaKnown RBP11.75□□□□□ -0.53
VCAN-212ENST00000515397 TNRC6BQ9UPQ9 1833 aaKnown RBP11.74□□□□□ -0.53
VCAN-212ENST00000515397 A0A087X0T9 212 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 A0A1W2PQJ5 194 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 KPNA3O00505 521 aaPredicted RBP11.74□□□□□ -0.53
VCAN-212ENST00000515397 MCF2LO15068 1137 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 ADH1BP00325 375 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 SERPING1P05155 500 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 FAM228BP0C875 321 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 C7P10643 843 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 GZMAP12544 262 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 TCF4P15884 667 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 C5AR1P21730 350 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 MIPP30301 263 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 CHRNA3P32297 505 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 HOXD12P35452 270 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 NOVA1P51513 510 aaKnown RBP11.74□□□□□ -0.53
VCAN-212ENST00000515397 PPP2CBP62714 309 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 PPP2CAP67775 309 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 NRG1Q02297 640 aaPredicted RBP11.74□□□□□ -0.53
VCAN-212ENST00000515397 POLD3Q15054 466 aaPredicted RBP11.74□□□□□ -0.53
VCAN-212ENST00000515397 C22orf39Q6P5X5 142 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 USP30Q70CQ3 517 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 ARRDC3Q96B67 414 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 ARHGEF26Q96DR7 871 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 CELF6Q96J87 481 aaKnown RBP11.74□□□□□ -0.53
VCAN-212ENST00000515397 SLC6A18Q96N87 628 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 KCTD15Q96SI1 283 aaPredicted RBP11.74□□□□□ -0.53
VCAN-212ENST00000515397 ORAI3Q9BRQ5 295 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 ACE2Q9BYF1 805 aaPredicted RBP11.74□□□□□ -0.53
VCAN-212ENST00000515397 THAP2Q9H0W7 228 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 TMEM248Q9NWD8 314 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 CABIN1Q9Y6J0 2220 aa11.74□□□□□ -0.53
VCAN-212ENST00000515397 LRRC72A6NJI9 287 aa11.73□□□□□ -0.53
VCAN-212ENST00000515397 BUB1O43683 1085 aa11.73□□□□□ -0.53
VCAN-212ENST00000515397 OPHN1O60890 802 aa11.73□□□□□ -0.53
VCAN-212ENST00000515397 RAMP2O60895 175 aa11.73□□□□□ -0.53
VCAN-212ENST00000515397 LEFTY1O75610 366 aa11.73□□□□□ -0.53
VCAN-212ENST00000515397 SYPP08247 313 aa11.73□□□□□ -0.53
VCAN-212ENST00000515397 CD27P26842 260 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms