RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 KAT6AQ92794 2004 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 NRCAMQ92823 1304 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 UBR1Q8IWV7 1749 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 PGK1P00558 417 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 CYP1A1P04798 512 aaPredicted RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 GRIA3P42263 894 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 SLC44A4Q53GD3 710 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 RAP1GAP2Q684P5 730 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 BNIPLQ7Z465 357 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 PTGR2Q8N8N7 351 aaPredicted RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 OR52K2Q8NGK3 314 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 ACMSDQ8TDX5 336 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 GLMNQ92990 594 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 CSPG4P5Q96PW8 444 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 BBS2Q9BXC9 721 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 LHX5Q9H2C1 402 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 TUBGCP4Q9UGJ1 667 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 PAIP2BQ9ULR5 123 aaKnown RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 PCDHA2Q9Y5H9 948 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 H7C4K7 107 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 GSC2O15499 205 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 BPGMP07738 259 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 MYL4P12829 197 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 BOP1Q14137 746 aaKnown RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 SWT1Q5T5J6 900 aaKnown RBP12.86□□□□□ -0.35
USP53-209ENST00000514665 DEFB128Q7Z7B8 93 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 TRPC4APQ8TEL6 797 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 EXOC2Q96KP1 924 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 HGH1Q9BTY7 390 aa12.86□□□□□ -0.35
USP53-209ENST00000514665 MGAT4DA6NG13 374 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 GRIN3BO60391 1043 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 AKR1A1P14550 325 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 ATP5F1P24539 256 aaPredicted RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 SERPINB1P30740 379 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 NRLP54845 237 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 SPIRE1Q08AE8 756 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 RNASEH2BQ5TBB1 312 aaKnown RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 PMF1Q6P1K2 205 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 PCSK9Q8NBP7 692 aaKnown RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 TRAPPC9Q96Q05 1148 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 PAIP1Q9H074 479 aaKnown RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 CCDC154A6NI56 674 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 SEC22BO75396 215 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 KRT6AP02538 564 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 KRT6BP04259 564 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 KRT8P05787 483 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 SMIM10L2AP0DMW4 78 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 SMIM10L2BP0DMW5 78 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 KRT6CP48668 564 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 CCT8P50990 548 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 C16orf72Q14CZ0 275 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 PPM1JQ5JR12 505 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 RETSATQ6NUM9 610 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 LCLAT1Q6UWP7 414 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 NET1Q7Z628 596 aaPredicted RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 TMEM86AQ8N2M4 240 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 GPR20Q99678 358 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 BDH2Q9BUT1 245 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 TMEM109Q9BVC6 243 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 POLR1EQ9GZS1 481 aaKnown RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 RMND5AQ9H871 391 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 STARD7Q9NQZ5 370 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 PLLPQ9Y342 182 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 KDM4FA0A1W2PPD8 638 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 RGSL1A5PLK6 1076 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 CILPO75339 1184 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 SERPINA6P08185 405 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 LTA4HP09960 611 aaKnown RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 FCGR1AP12314 374 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 ATP6V1C1P21283 382 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 PSME3P61289 254 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 MRPS5P82675 430 aaKnown RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 HIST2H2ACQ16777 129 aaPredicted RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 FAM98BQ52LJ0 330 aaKnown RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 HIST2H2AA3Q6FI13 130 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 C16orf59Q7L2K0 433 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 AMIGO2Q86SJ2 522 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 DHDDSQ86SQ9 333 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 DHRSXQ8N5I4 330 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 RBM15BQ8NDT2 890 aaKnown RBP12.85□□□□□ -0.35
USP53-209ENST00000514665 DNAJB14Q8TBM8 379 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 SEMA3CQ99985 751 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 ABCC13Q9NSE7 274 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.85□□□□□ -0.35
USP53-209ENST00000514665 SH3BP4Q9P0V3 963 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 MYRFQ9Y2G1 1151 aa12.85□□□□□ -0.35
USP53-209ENST00000514665 SNUPNO95149 360 aaKnown RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 MSLNQ13421 630 aaPredicted RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 DCAF12L1Q5VU92 463 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 MILR1Q7Z6M3 343 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 TMCO5AQ8N6Q1 288 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 SH3GL1Q99961 368 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 CYLDQ9NQC7 956 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 MPP6Q9NZW5 540 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 UBA2Q9UBT2 640 aaPredicted RBP12.84□□□□□ -0.35
USP53-209ENST00000514665 EFR3BQ9Y2G0 817 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 TRPV2Q9Y5S1 764 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 MYH2Q9UKX2 1941 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 IFT172Q9UG01 1749 aa12.84□□□□□ -0.35
USP53-209ENST00000514665 TTLL13PA6NNM8 815 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms