RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 VASPP50552 380 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 CLN3Q13286 438 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 ZNF177Q13360 481 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 DRAP1Q14919 205 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 STILQ15468 1287 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 TAF5Q15542 800 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 RABGAP1LQ5R372 815 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 NEK5Q6P3R8 708 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 PTAR1Q7Z6K3 402 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 ABI3BPQ7Z7G0 1075 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 PPM1KQ8N3J5 372 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 SLC35C1Q96A29 364 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 CCDC97Q96F63 343 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 BMFQ96LC9 184 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 RPRD1AQ96P16 312 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 FAM117AQ9C073 453 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 EVA1BQ9NVM1 165 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 VPS28Q9UK41 221 aa20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 COL27A1Q8IZC6 1860 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-215ENST00000514093 POM121BA6NF01 834 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 K7ERQ8 282 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 TNFSF15O95150 251 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 CHRNA3P32297 505 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 GGCXP38435 758 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 RPL34P49207 117 aaKnown RBP20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 OXCT1P55809 520 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 HNRNPKP61978 463 aaKnown RBP eCLIP20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 NFKB2Q00653 900 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 MAPK8IP2Q13387 824 aaPredicted RBP20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 FZD2Q14332 565 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 DEFB133Q30KQ1 61 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 ZCCHC8Q6NZY4 707 aaKnown RBP20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 DENND1BQ6P3S1 775 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 KRBA2Q6ZNG9 492 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 RRAGAQ7L523 313 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 CHST14Q8NCH0 376 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 ZNF548Q8NEK5 533 aaPredicted RBP20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 NT5C1BQ96P26 610 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.83■□□□□ 0.933e-6■■□□□ 13.4
SQSTM1-215ENST00000514093 IL17BQ9UHF5 180 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 SLC12A6Q9UHW9 1150 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 KLF15Q9UIH9 416 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 PCDHGA8Q9Y5G5 932 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 OR51B4Q9Y5P0 310 aa20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 HEMK1Q9Y5R4 338 aaPredicted RBP20.83■□□□□ 0.93
SQSTM1-215ENST00000514093 A6NNZ2 444 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 CDRT15L2A8MXV6 281 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 SLC16A3O15427 465 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 EFSO43281 561 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 SART1O43290 800 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 LZTS3O60299 673 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 SRCP12931 536 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 PMS1P54277 932 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 EIF4EBP2Q13542 120 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 ARL13BQ3SXY8 428 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 PERM1Q5SV97 790 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 ANKRD40Q6AI12 368 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 RBM44Q6ZP01 1051 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 BEND5Q7L4P6 421 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 RNF34Q969K3 372 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 IFT43Q96FT9 208 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 FAM204AQ9H8W3 233 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 POPDC2Q9HBU9 364 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 DYRK4Q9NR20 520 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 ARMCX3Q9UH62 379 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 VANGL2Q9ULK5 521 aa20.82■□□□□ 0.92
SQSTM1-215ENST00000514093 E5RJQ4 531 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 RAD51BO15315 384 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 SNAP91O60641 907 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 PAK4O96013 591 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 CSF2P04141 144 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 PRCPP42785 496 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 FMO5P49326 533 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 YWHAZP63104 245 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 AUHQ13825 339 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 C6orf132Q5T0Z8 1188 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 TTC39BQ5VTQ0 682 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 ATP11CQ8NB49 1132 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 OR2A12Q8NGT7 310 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 PPP1R9BQ96SB3 815 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 MUC3BQ9H195 1237 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 FARP1Q9Y4F1 1045 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 KIF26BQ2KJY2 2108 aa20.81■□□□□ 0.92
SQSTM1-215ENST00000514093 EME2A4GXA9 379 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 MUSKO15146 869 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 SMAD6O43541 496 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 RRM1P23921 792 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 ACADSBP45954 432 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 FKBP3Q00688 224 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 SRSF1Q07955 248 aaKnown RBP eCLIP20.8■□□□□ 0.921e-6■■□□□ 13.1
SQSTM1-215ENST00000514093 CCDC15Q0P6D6 951 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 FGL2Q14314 439 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 LINC00303Q3SY05 128 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 TMEM259Q4ZIN3 620 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 ARSIQ5FYB1 569 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 ERN2Q76MJ5 926 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 C14orf80Q86SX3 495 aa20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 DCP2Q8IU60 420 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-215ENST00000514093 ARHGEF19Q8IW93 802 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms