RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ENTPD5O75356 428 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 RLN2P04090 185 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PRDX6P30041 224 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ELK3P41970 407 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC9A3P48764 834 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 KPNA1P52294 538 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 EZH2Q15910 746 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 CA9Q16790 459 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 MTX3Q5HYI7 312 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SULT1C3Q6IMI6 304 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 C11orf24Q96F05 449 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 FRMD6Q96NE9 622 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SLITRK1Q96PX8 696 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ACOX2Q99424 681 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 HGH1Q9BTY7 390 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ARMCX1Q9P291 453 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PSME2Q9UL46 239 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 CLEC4AQ9UMR7 237 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ALG5Q9Y673 324 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ASTN2O75129 1339 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PPEF1O14829 653 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ATP5F1P24539 256 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PON1P27169 355 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 TPTEP56180 551 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PRKG2Q13237 762 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 RRP1BQ14684 758 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 P2RY8Q86VZ1 359 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 MAB21L3Q8N8X9 362 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 FAM47BQ8NA70 645 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ETNPPLQ8TBG4 499 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 MCOLN3Q8TDD5 553 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 NXNL1Q96CM4 212 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 CRELD1Q96HD1 420 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 RBM4BQ9BQ04 359 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 RBM4Q9BWF3 364 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ZCCHC2Q9C0B9 1178 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC22A4Q9H015 551 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 CST11Q9H112 138 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 GJB4Q9NTQ9 266 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 TBC1D24Q9ULP9 559 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 CLUHO75153 1309 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC30A4O14863 429 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SGTAO43765 313 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PIGNO95427 931 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ZBTB11O95625 1053 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ITGA3P26006 1051 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 RGS7P49802 495 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ZSCAN18Q8TBC5 510 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PHF10Q8WUB8 498 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 MKL1Q969V6 931 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 REXO5Q96IC2 774 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 KCNN2Q9H2S1 579 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 WDCPQ9H6R7 721 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 JPH1Q9HDC5 661 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 RNF146Q9NTX7 359 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 DNAAF2Q9NVR5 837 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 XPR1Q9UBH6 696 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SAMD4AQ9UPU9 718 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ZMYM2Q9UBW7 1377 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 LRRC14BA6NHZ5 514 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SASH3O75995 380 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF432O94892 652 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PARNO95453 639 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 IFNGP01579 166 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 RLN1P04808 185 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC6A4P31645 630 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ACSM2AQ08AH3 577 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 BIKQ13323 160 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 TTMPQ5BVD1 217 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ACSM2BQ68CK6 577 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 MOXD1Q6UVY6 613 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 SLFN11Q7Z7L1 901 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 OAFQ86UD1 273 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ZZZ3Q8IYH5 903 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF614Q8N883 585 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 DAGLBQ8NCG7 672 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 WDR48Q8TAF3 677 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 BSNDQ8WZ55 320 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 DIRAS2Q96HU8 199 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 INTS10Q9NVR2 710 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 MLH3Q9UHC1 1453 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 E2F8A0AVK6 867 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 WRBO00258 174 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CST1P01037 141 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ADRA1DP25100 572 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 GNG2P59768 71 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 IFI35P80217 286 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ACVR2BQ13705 512 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 BMT2Q1RMZ1 405 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 KCNMB4Q86W47 210 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 COMMD2Q86X83 199 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 RNF149Q8NC42 400 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ACTL9Q8TC94 416 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 RHBDF1Q96CC6 855 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 YIPF2Q9BWQ6 316 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 GTPBP2Q9BX10 602 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 KAT8Q9H7Z6 458 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 CXorf21Q9HAI6 301 aa11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC22A1O15245 554 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms