RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CD68P34810 354 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 NOS2P35228 1153 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 TPI1P60174 286 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 ZBTB17Q13105 803 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 FAM219BQ5XKK7 198 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 ZNF280DQ6N043 979 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 SIX6OS1Q8N1H7 587 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 LRRC52Q8N7C0 313 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 B4GALNT2Q8NHY0 566 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 TSNARE1Q96NA8 513 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 NPY6RQ99463 290 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 C16orf70Q9BSU1 422 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 SUDS3Q9H7L9 328 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 RAP2CQ9Y3L5 183 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 COMMD3-BMI1R4GMX3 469 aa9.42□□□□□ -0.9
LIMCH1-215ENST00000512632 KLHL33A6NCF5 533 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 CASQ2O14958 399 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 PEX1O43933 1283 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 TKTL1P51854 596 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 OTOP3Q7RTS5 596 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SLC41A1Q8IVJ1 513 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 DENND6AQ8IWF6 608 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 FSTL5Q8N475 847 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 WNT8BQ93098 351 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 WDR41Q9HAD4 459 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 GTF2IRD1Q9UHL9 959 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 STAP1Q9ULZ2 295 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 GNEQ9Y223 722 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SMIM28A0A1B0GU29 152 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 NEMP2A6NFY4 417 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 DCLK1O15075 740 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 HUS1O60921 280 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 MPOP05164 745 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 NELFEP18615 380 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 XIAPP98170 497 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SOX4Q06945 474 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 GRM2Q14416 872 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 MARCH8Q5T0T0 291 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 ARMC3Q5W041 872 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SLC27A1Q6PCB7 646 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 C16orf89Q6UX73 402 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 B3GALNT2Q8NCR0 500 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SPATA22Q8NHS9 363 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 EDEM1Q92611 657 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 EZH1Q92800 747 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 BTBD9Q96Q07 612 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 HAPLN3Q96S86 360 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 CCDC28BQ9BUN5 200 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 ULBP1Q9BZM6 244 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 ADAM28Q9UKQ2 775 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 A0A1B0GTW7 788 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 YJEFN3A6XGL0 299 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 TIMM44O43615 452 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 MT-CO1P00395 513 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SBK3P0C264 359 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SMIM18P0DKX4 95 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 MAGEA12P43365 314 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 POU6F1Q14863 301 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 NRF1Q16656 503 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 ZNF423Q2M1K9 1284 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 RARS2Q5T160 578 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 ARHGAP22Q7Z5H3 698 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 CLEC14AQ86T13 490 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 RNF135Q8IUD6 432 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 FTHL17Q9BXU8 183 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SEMA6AQ9H2E6 1030 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 DDIT4Q9NX09 232 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 C6orf203Q9P0P8 240 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 XPR1Q9UBH6 696 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 TBC1D30Q9Y2I9 924 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 TIMM13Q9Y5L4 95 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 HNRNPLP14866 589 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 HDCP19113 662 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 PRDX6P30041 224 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 CDKL1Q00532 357 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 DPYSQ14117 519 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 R3HDM1Q15032 1099 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 PAFAH1B3Q15102 231 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 NADK2Q4G0N4 442 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 SMYD5Q6GMV2 418 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 RPS27LQ71UM5 84 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 NCSTNQ92542 709 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 NXNL1Q96CM4 212 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 OPTNQ96CV9 577 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 DRC3Q9H069 523 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 PCDHAC1Q9H158 963 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 ATXN3LQ9H3M9 355 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 PLEKHA5Q9HAU0 1116 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 CASS4Q9NQ75 786 aa9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 RCOR3Q9P2K3 495 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-215ENST00000512632 TMEM114B3SHH9 223 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 CSPG5O95196 566 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 VAPBO95292 243 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 AHSGP02765 367 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 NCAM1P13591 858 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 ME2P23368 584 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 GABRB3P28472 473 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 MPP1Q00013 466 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 CYTH1Q15438 398 aa9.4□□□□□ -0.9
LIMCH1-215ENST00000512632 LIPMQ5VYY2 423 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms