RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 RPLP2P05387 115 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 CD48P09326 243 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 CRYBB1P53674 252 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SLC10A6Q3KNW5 377 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 XYLT1Q86Y38 959 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 TMEM86AQ8N2M4 240 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 APOL5Q9BWW9 433 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 ATAD3AQ9NVI7 634 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 TRPM5Q9NZQ8 1165 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 A0A0A0MRY4 1105 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 CFAP99D6REC4 459 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 KPNA4O00629 521 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 TSPAN1O60635 241 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 CBFA2T3O75081 653 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 CFHP08603 1231 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 MBL2P11226 248 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SLC39A4Q6P5W5 647 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 KCNMB4Q86W47 210 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SNX19Q92543 992 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SPATA13Q96N96 652 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 FAM105AQ9NUU6 356 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 PTTG2Q9NZH5 202 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 CICQ96RK0 1608 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 ARHGEF9O43307 516 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 TSPAN3O60637 253 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 ALDH1A1P00352 501 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SMPD1P17405 629 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 ERCC2P18074 760 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 OR1E1P30953 314 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 S100A5P33763 92 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 NAA20P61599 178 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 WASHC5Q12768 1159 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 TAF5Q15542 800 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 FUT11Q495W5 492 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 OTUD3Q5T2D3 398 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 AGAP9Q5VTM2 703 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SDHAF4Q5VUM1 108 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 PMF1Q6P1K2 205 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 LCLAT1Q6UWP7 414 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 ZCCHC7Q8N3Z6 543 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 ZC4H2Q9NQZ6 224 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 LNPEPQ9UIQ6 1025 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SATB2Q9UPW6 733 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 A0A096LPK6 155 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SCAMP3O14828 347 aaKnown RBP16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 MSCO60682 206 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 RAMP2O60895 175 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 RAP1GDS1P52306 607 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 KRT33BQ14525 404 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 CYP1B1Q16678 543 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SLC4A11Q8NBS3 891 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 PCDH18Q9HCL0 1135 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 SLC7A8Q9UHI5 535 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 PKP3Q9Y446 797 aa16.55■□□□□ 0.24
CCDC88B-209ENST00000494080 CYP1A1P04798 512 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 CCR3P51677 355 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 TERB1Q8NA31 727 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 FBXO44Q9H4M3 255 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 CACYBPQ9HB71 228 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 TIMMDC1Q9NPL8 285 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 SELENONQ9NZV5 590 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 PSMD13Q9UNM6 376 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 MYH6P13533 1939 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 NCF1BA6NI72 391 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 NCF1CA8MVU1 366 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 TRDMT1O14717 391 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 UNGP13051 313 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 NCF1P14598 390 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 YWHAQP27348 245 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 OXCT1P55809 520 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 AASDHQ4L235 1098 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 SGO1Q5FBB7 561 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 RGMBQ6NW40 437 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 ELMSAN1Q6PJG2 1045 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 AMIGO2Q86SJ2 522 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 DLG3Q92796 817 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 UBE2OQ9C0C9 1292 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 H7C4K7 107 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 MYL4P12829 197 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 FASP25445 335 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 NOVP48745 357 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 FLT3LGP49771 235 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 ABCE1P61221 599 aaKnown RBP16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 GALNTL6Q49A17 601 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 GLMNQ92990 594 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 PLEKHG4BQ96PX9 1271 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 CCDC167Q9P0B6 97 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 KIF17Q9P2E2 1029 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 KANSL3Q9P2N6 904 aa16.54■□□□□ 0.24
CCDC88B-209ENST00000494080 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 CHADO15335 359 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 FAM155BO75949 473 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 TGDSO95455 350 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 PGAM1P18669 254 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 MATKP42679 507 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 RGS21Q2M5E4 152 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 ZNF470Q6ECI4 717 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 DDX53Q86TM3 631 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 DHFR2Q86XF0 187 aa16.53■□□□□ 0.24
CCDC88B-209ENST00000494080 CARNMT1Q8N4J0 409 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms