RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 ISXQ2M1V0 245 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 ZNF284Q2VY69 593 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 COBLL1Q53SF7 1204 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 ZC3H12AQ5D1E8 599 aaKnown RBP8.42□□□□□ -1.06
USP39-216ENST00000490193 DCAF17Q5H9S7 520 aaPredicted RBP8.42□□□□□ -1.06
USP39-216ENST00000490193 FOXD4L5Q5VV16 416 aaPredicted RBP8.42□□□□□ -1.06
USP39-216ENST00000490193 TCERG1LQ5VWI1 586 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 SYPL2Q5VXT5 272 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 GCNT7Q6ZNI0 430 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 TMC6Q7Z403 805 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 DCP2Q8IU60 420 aaKnown RBP8.42□□□□□ -1.06
USP39-216ENST00000490193 SLC22A18ASQ8N1D0 253 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 ATP6V0D2Q8N8Y2 350 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 OR13H1Q8NG92 308 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 STK32AQ8WU08 396 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 FOXD4L4Q8WXT5 416 aaPredicted RBP8.42□□□□□ -1.06
USP39-216ENST00000490193 SLC35C1Q96A29 364 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 FAM149B1Q96BN6 582 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 CCDC97Q96F63 343 aaPredicted RBP8.42□□□□□ -1.06
USP39-216ENST00000490193 PRR11Q96HE9 360 aaPredicted RBP8.42□□□□□ -1.06
USP39-216ENST00000490193 VCPIP1Q96JH7 1222 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 SLC46A1Q96NT5 459 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 PPP1R9BQ96SB3 815 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 MIS12Q9H081 205 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP39-216ENST00000490193 DACH1Q9UI36 760 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 SLC25A13Q9UJS0 675 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 CA5BQ9Y2D0 317 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 PCDHGA8Q9Y5G5 932 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 OR51B4Q9Y5P0 310 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 TRPM6Q9BX84 2022 aa8.42□□□□□ -1.06
USP39-216ENST00000490193 A0A1W2PQU0 124 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 CDRT15L2A8MXV6 281 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 K7ESM1 405 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 FFAR2O15552 330 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 TRUB2O95900 331 aaKnown RBP8.41□□□□□ -1.06
USP39-216ENST00000490193 BRD2P25440 801 aaKnown RBP8.41□□□□□ -1.06
USP39-216ENST00000490193 AKT2P31751 481 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 NDUFA8P51970 172 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 HNRNPKP61978 463 aaKnown RBP eCLIP8.41□□□□□ -1.06
USP39-216ENST00000490193 NUCB2P80303 420 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 FKBP3Q00688 224 aaKnown RBP8.41□□□□□ -1.06
USP39-216ENST00000490193 CCDC15Q0P6D6 951 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 MTA1Q13330 715 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 DLG2Q15700 870 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 TMEM259Q4ZIN3 620 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 RABGAP1LQ5R372 815 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 ZCCHC8Q6NZY4 707 aaKnown RBP8.41□□□□□ -1.06
USP39-216ENST00000490193 KRBA2Q6ZNG9 492 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 Q6ZVU0 165 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 CLEC14AQ86T13 490 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 HORMAD1Q86X24 394 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 SH2D3CQ8N5H7 860 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 IFI44Q8TCB0 444 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 SNX21Q969T3 373 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 NT5C1BQ96P26 610 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 FEM1AQ9BSK4 669 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 CALN1Q9BXU9 219 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 POPDC2Q9HBU9 364 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 NCKIPSDQ9NZQ3 722 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 SATB2Q9UPW6 733 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 HS3ST2Q9Y278 367 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 PCDHB4Q9Y5E5 795 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 CSNK1G3Q9Y6M4 447 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 RP1P56715 2156 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 KIF26BQ2KJY2 2108 aa8.41□□□□□ -1.06
USP39-216ENST00000490193 COL12A1Q99715 3063 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 EME2A4GXA9 379 aaPredicted RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 A6NNZ2 444 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 PYCARD-AS1I3L0S3 204 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 SLC31A1O15431 190 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 SLC28A2O43868 658 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 TCEA3O75764 348 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 CSF2P04141 144 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 CTSLP07711 333 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 SLC2A3P11169 496 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 NME1P15531 152 aaKnown RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 PRLRP16471 622 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 TGM2P21980 687 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 RBMS1P29558 406 aaKnown RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 PRCPP42785 496 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 FMO5P49326 533 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 CSRP3P50461 194 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 PRSS12P56730 875 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 YWHAZP63104 245 aaKnown RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 PITX1P78337 314 aaPredicted RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 GCNT1Q02742 428 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 LRMPQ12912 555 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 PKP1Q13835 747 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 POM121L1PQ3SYA9 428 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 C5orf22Q49AR2 442 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 ACCSLQ4AC99 568 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 C3orf38Q5JPI3 329 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 FBXL22Q6P050 247 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 XKR5Q6UX68 686 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 KYAT3Q6YP21 454 aaKnown RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 TMEM110Q86TL2 294 aa8.4□□□□□ -1.06
USP39-216ENST00000490193 CIR1Q86X95 450 aaPredicted RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 SMYD4Q8IYR2 804 aaPredicted RBP8.4□□□□□ -1.06
USP39-216ENST00000490193 PPM1KQ8N3J5 372 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms