RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 DEFB115Q30KQ5 88 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 ANKRD20A4Q4UJ75 823 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 C6orf10Q5SRN2 563 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 RNF43Q68DV7 783 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 NCBP2-AS2Q69YL0 99 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 DENND1CQ8IV53 801 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 LZTR1Q8N653 840 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 EMID1Q96A84 441 aaPredicted RBP13.45□□□□□ -0.26
HMGN1-216ENST00000486741 VAT1Q99536 393 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 PTPN18Q99952 460 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 NMUR2Q9GZQ4 415 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 AGO3Q9H9G7 860 aaKnown RBP13.45□□□□□ -0.26
HMGN1-216ENST00000486741 PLLPQ9Y342 182 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 H7C4K7 107 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 ZNF189O75820 626 aaPredicted RBP13.45□□□□□ -0.26
HMGN1-216ENST00000486741 TOMM70O94826 608 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 OR1D2P34982 312 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 WNT3AP56704 352 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 KRT80Q6KB66 452 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 RFWD3Q6PCD5 774 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 RHBDF2Q6PJF5 856 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 TMC7Q7Z402 723 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 SUGP1Q8IWZ8 645 aaKnown RBP13.45□□□□□ -0.26
HMGN1-216ENST00000486741 TP53INP2Q8IXH6 220 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 TUBGCP3Q96CW5 907 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 ADAMTS10Q9H324 1103 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 ARL8BQ9NVJ2 186 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 GTF2IRD1Q9UHL9 959 aa13.45□□□□□ -0.26
HMGN1-216ENST00000486741 TTC24A2A3L6 582 aaPredicted RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 GNGT2O14610 69 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 PRPF4O43172 522 aaKnown RBP eCLIP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 C2P06681 752 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 WARSP23381 471 aaKnown RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 VWA5B1Q5TIE3 1220 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 KYAT3Q6YP21 454 aaKnown RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 ARFGAP1Q8N6T3 406 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 DBF4BQ8NFT6 615 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 FGD4Q96M96 766 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 YME1L1Q96TA2 773 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 SCUBE2Q9NQ36 999 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 RGS18Q9NS28 235 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 TBC1D13Q9NVG8 400 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 NCKIPSDQ9NZQ3 722 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 ARHGAP26Q9UNA1 814 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 CNTN6Q9UQ52 1028 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 C5orf60A6NFR6 353 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 C2orf81A6NN90 581 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 PTPN3P26045 913 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 AKT1P31749 480 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 CHRNA4P43681 627 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 RHOAP61586 193 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 ISLR2Q6UXK2 745 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 PIGWQ7Z7B1 504 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 TTC7BQ86TV6 843 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 PDZD8Q8NEN9 1154 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 TM6SF2Q9BZW4 377 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 CRTAC1Q9NQ79 661 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 GGA2Q9UJY4 613 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 GSTA4O15217 222 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 GCATO75600 419 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 CCND3P30281 292 aaPredicted RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 RANBP1P43487 201 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 SERPINH1P50454 418 aaKnown RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 BTG3Q14201 252 aaPredicted RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 PCID2Q5JVF3 399 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 NAIF1Q69YI7 327 aaPredicted RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 LRRC8BQ6P9F7 803 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 SLC24A5Q71RS6 500 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 SMOQ99835 787 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 UXTQ9UBK9 157 aaPredicted RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 PKP3Q9Y446 797 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 THSD7AQ9UPZ6 1657 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 ANGPT2O15123 496 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 GALNT3Q14435 633 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 TMTC4Q5T4D3 741 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 TPGS1Q6ZTW0 290 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 DEFB118Q96PH6 123 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 ACE2Q9BYF1 805 aaPredicted RBP13.44□□□□□ -0.26
HMGN1-216ENST00000486741 BRD8Q9H0E9 1235 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 BPIFA1Q9NP55 256 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 FLRT1Q9NZU1 646 aa13.44□□□□□ -0.26
HMGN1-216ENST00000486741 RNF103-CHMP3A0A140T963 221 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 GPR32O75388 356 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 TRIM16O95361 564 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 CYBBP04839 570 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 RPLP2P05387 115 aaKnown RBP13.43□□□□□ -0.26
HMGN1-216ENST00000486741 URODP06132 367 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 CCDC166P0CW27 439 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 HSPA8P11142 646 aaKnown RBP13.43□□□□□ -0.26
HMGN1-216ENST00000486741 HNRNPLP14866 589 aaKnown RBP eCLIP13.43□□□□□ -0.26
HMGN1-216ENST00000486741 EPHA3P29320 983 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 SLC20A2Q08357 652 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 LRRC23Q53EV4 343 aaPredicted RBP13.43□□□□□ -0.26
HMGN1-216ENST00000486741 SPDYAQ5MJ70 313 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 ANGPTL8Q6UXH0 198 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 RNF168Q8IYW5 571 aaPredicted RBP13.43□□□□□ -0.26
HMGN1-216ENST00000486741 TMEM209Q96SK2 561 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 DDX50Q9BQ39 737 aaKnown RBP13.43□□□□□ -0.26
HMGN1-216ENST00000486741 ANLNQ9NQW6 1124 aa13.43□□□□□ -0.26
HMGN1-216ENST00000486741 MIOSQ9NXC5 875 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms