RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 FAM217AQ8IXS0 508 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 CFAP52Q8N1V2 620 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 ARL14EPQ8N8R7 260 aaPredicted RBP14.31□□□□□ -0.12
CLK3-204ENST00000483723 MDM1Q8TC05 714 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 TTC17Q96AE7 1141 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 TADA1Q96BN2 335 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 HTATIP2Q9BUP3 242 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 PDFQ9HBH1 243 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 ENTPD7Q9NQZ7 604 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 TLR9Q9NR96 1032 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 SMYD2Q9NRG4 433 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 SYBUQ9NX95 663 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 BFARQ9NZS9 450 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 ZNF180Q9UJW8 692 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 TBC1D30Q9Y2I9 924 aa14.31□□□□□ -0.12
CLK3-204ENST00000483723 MAGEB16A2A368 324 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 PRAMEF11O60813 436 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 CHN1P15882 459 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 LSP1P33241 339 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 CA8P35219 290 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 ACVRL1P37023 503 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 EPHA5P54756 1037 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 RPS24P62847 133 aaKnown RBP14.3□□□□□ -0.12
CLK3-204ENST00000483723 SLC10A7Q0GE19 358 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 OLIG2Q13516 323 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 MARC1Q5VT66 337 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 DENND5AQ6IQ26 1287 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 ZNF449Q6P9G9 518 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 TMEM135Q86UB9 458 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 CCDC117Q8IWD4 279 aaPredicted RBP14.3□□□□□ -0.12
CLK3-204ENST00000483723 SPATA22Q8NHS9 363 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 MRPS31Q92665 395 aaKnown RBP14.3□□□□□ -0.12
CLK3-204ENST00000483723 IMP4Q96G21 291 aaKnown RBP14.3□□□□□ -0.12
CLK3-204ENST00000483723 ZNF599Q96NL3 588 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 LBHD1Q9BQE6 289 aaPredicted RBP14.3□□□□□ -0.12
CLK3-204ENST00000483723 C17orf80Q9BSJ5 609 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 SP110Q9HB58 689 aa14.3□□□□□ -0.12
CLK3-204ENST00000483723 ILVBLA1L0T0 632 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 CXorf49A8MYA2 514 aaPredicted RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 USP12O75317 370 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 ARHGEF15O94989 841 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 BRAFP15056 766 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 CDC25CP30307 473 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 SGSHP51688 502 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 SMAD3P84022 425 aaKnown RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 GNA12Q03113 381 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 CDH17Q12864 832 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 MPP2Q14168 576 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 SPANXN3Q5MJ09 141 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 TTC39BQ5VTQ0 682 aaPredicted RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 PLPP4Q5VZY2 271 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 TTC19Q6DKK2 380 aaPredicted RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 TRMT10BQ6PF06 316 aaKnown RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 KDELC1Q6UW63 502 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 RANBP10Q6VN20 620 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 SETD3Q86TU7 594 aaPredicted RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 SLC26A11Q86WA9 606 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 LRRC6Q86X45 466 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 OR52K2Q8NGK3 314 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 ATXN2LQ8WWM7 1075 aaKnown RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 SELENOSQ9BQE4 189 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 TRIM56Q9BRZ2 755 aaKnown RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 SSU72Q9NP77 194 aaKnown RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 A0A1B0GVM2 712 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 TCAF2A6NFQ2 919 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 PRPF4O43172 522 aaKnown RBP eCLIP14.29□□□□□ -0.12
CLK3-204ENST00000483723 PIAS1O75925 651 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 MT-CYBP00156 380 aaPredicted RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 HOXD9P28356 352 aaPredicted RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 CRADDP78560 199 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 MPP3Q13368 585 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 ARMC3Q5W041 872 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 ZNF783Q6ZMS7 281 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 HTR3DQ70Z44 454 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 SRRM1Q8IYB3 904 aaKnown RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 ELMOD1Q8N336 334 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 SLC22A17Q8WUG5 538 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 NSMCE1Q8WV22 266 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 TBL1YQ9BQ87 522 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 ACE2Q9BYF1 805 aaPredicted RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 IL22Q9GZX6 179 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 TRABDQ9H4I3 376 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 CCDC134Q9H6E4 229 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 ARNT2Q9HBZ2 717 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 TRPC7Q9HCX4 862 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 ATP13A1Q9HD20 1204 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 PIH1D1Q9NWS0 290 aaKnown RBP14.29□□□□□ -0.12
CLK3-204ENST00000483723 SMPD4Q9NXE4 827 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 UBP1Q9NZI7 540 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 CPQQ9Y646 472 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 FAM169AQ9Y6X4 670 aa14.29□□□□□ -0.12
CLK3-204ENST00000483723 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.28□□□□□ -0.12
CLK3-204ENST00000483723 A0A0D9SEW6 157 aa14.28□□□□□ -0.12
CLK3-204ENST00000483723 IQANK1A0A1B0GTG1 560 aa14.28□□□□□ -0.12
CLK3-204ENST00000483723 FAM237BA0A1B0GVD1 139 aa14.28□□□□□ -0.12
CLK3-204ENST00000483723 A0A1W2PPM1 405 aa14.28□□□□□ -0.12
CLK3-204ENST00000483723 TMEM120BA0PK00 339 aa14.28□□□□□ -0.12
CLK3-204ENST00000483723 NRG2O14511 850 aaPredicted RBP14.28□□□□□ -0.12
CLK3-204ENST00000483723 GRM6O15303 877 aa14.28□□□□□ -0.12
CLK3-204ENST00000483723 KDELR3O43731 214 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms