RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 SLC1A6P48664 564 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 GEMP55040 296 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 FSTL4Q6MZW2 842 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 POTEHQ6S545 545 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 RTL3Q8N8U3 475 aaKnown RBP12.44□□□□□ -0.42
PTPRF-212ENST00000477970 RNF34Q969K3 372 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 SLC39A13Q96H72 371 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 DEFB118Q96PH6 123 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 TBL1YQ9BQ87 522 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 NMUR2Q9GZQ4 415 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 GLOD4Q9HC38 313 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 COMMD8Q9NX08 183 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 TLR6Q9Y2C9 796 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 C15orf41Q9Y2V0 281 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 SNX10Q9Y5X0 201 aa12.44□□□□□ -0.42
PTPRF-212ENST00000477970 MYO18AQ92614 2054 aaKnown RBP12.43□□□□□ -0.42
PTPRF-212ENST00000477970 SYN3O14994 580 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 JCHAINP01591 159 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 COL6A2P12110 1019 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 AOC1P19801 751 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 GCKP35557 465 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 TUBB3Q13509 450 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 NFE2Q16621 373 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-212ENST00000477970 CMPK2Q5EBM0 449 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 TLDC1Q6P9B6 456 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 SLC24A5Q71RS6 500 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 MON1AQ86VX9 555 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 COLGALT2Q8IYK4 626 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 ARHGAP24Q8N264 748 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 SLC43A3Q8NBI5 491 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 TSEN34Q9BSV6 310 aaKnown RBP12.43□□□□□ -0.42
PTPRF-212ENST00000477970 FBXO44Q9H4M3 255 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 ENTPD7Q9NQZ7 604 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 TBC1D13Q9NVG8 400 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 DONSONQ9NYP3 566 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-212ENST00000477970 MOXD2PA6NHM9 499 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 GNAZP19086 355 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 RAP1GDS1P52306 607 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 AQP5P55064 265 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 MPP3Q13368 585 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 CERCAMQ5T4B2 595 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 PKN3Q6P5Z2 889 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 GLB1LQ6UWU2 654 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 CEP57Q86XR8 500 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 ZNF683Q8IZ20 524 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 SCAMP5Q8TAC9 235 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 URGCPQ8TCY9 931 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 CASP10Q92851 521 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 SORT1Q99523 831 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 TMEM216Q9P0N5 145 aa12.43□□□□□ -0.42
PTPRF-212ENST00000477970 ITGB1P05556 798 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ESRRAP11474 423 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 NDST2P52849 883 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ILF2Q12905 390 aaKnown RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 MTA1Q13330 715 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 UGP2Q16851 508 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ANO4Q32M45 955 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 TMPRSS6Q8IU80 811 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ZNF778Q96MU6 729 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 RHOJQ9H4E5 214 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 PIH1D1Q9NWS0 290 aaKnown RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 TAGLN3Q9UI15 199 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 PCDHB12Q9Y5F1 795 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ANP32DO95626 131 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 GRIK1P39086 918 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ABCE1P61221 599 aaKnown RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 RABGAP1LQ5R372 815 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 DENND5AQ6IQ26 1287 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 RNF180Q86T96 592 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ALYREFQ86V81 257 aaKnown RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 UMODL1-AS1Q8N2C9 162 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 PPP1R14CQ8TAE6 165 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 PPP4R1Q8TF05 950 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 FCRL2Q96LA5 508 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 RANBP9Q96S59 729 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ELAC1Q9H777 363 aaKnown RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 ARNT2Q9HBZ2 717 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 LTBP2Q14767 1821 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 MYLKQ15746 1914 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 CCDC195A0A1B0GUA6 201 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 GYG2O15488 501 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 CKBP12277 381 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 CPA3P15088 417 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 MLLT6P55198 1093 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 RPL10AP62906 217 aaKnown RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 OLIG2Q13516 323 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 MRPL58Q14197 206 aaKnown RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 NOMO2Q5JPE7 1267 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 C10orf107Q8IVU9 208 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 NUP93Q8N1F7 819 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 SREK1Q8WXA9 508 aaKnown RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 MFSD3Q96ES6 412 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 PRR11Q96HE9 360 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 FTHL17Q9BXU8 183 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 SLC39A8Q9C0K1 460 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 PRDM5Q9NQX1 630 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 C20orf96Q9NUD7 363 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-212ENST00000477970 TAS2R1Q9NYW7 299 aa12.42□□□□□ -0.42
PTPRF-212ENST00000477970 DOCK4Q8N1I0 1966 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms