RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PNMA6EA0A0J9YXQ4 647 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 C3orf70A6NLC5 250 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 ZG16O60844 167 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 CLDN7O95471 211 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 MYL3P08590 195 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 IFIT2P09913 472 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 NAGAP17050 411 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 PLK5Q496M5 336 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 STPG1Q5TH74 334 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 VWA5B1Q5TIE3 1220 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 TMEM88Q6PEY1 159 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 BEND5Q7L4P6 421 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 C11orf96Q7Z7L8 435 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 TRIM74Q86UV6 250 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 TRIM73Q86UV7 250 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 RASGRP3Q8IV61 690 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 NAGSQ8N159 534 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 SAMD3Q8N6K7 520 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 CEP76Q8TAP6 659 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 SORCS1Q8WY21 1168 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 ADGRG7Q96K78 797 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 MPHOSPH6Q99547 160 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 HIPK3Q9H422 1215 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 Q9N2J8 555 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 PHTF1Q9UMS5 762 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 SLC12A4Q9UP95 1085 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 GAB2Q9UQC2 676 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 ZBTB1Q9Y2K1 713 aa3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 COPG1Q9Y678 874 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-212ENST00000474059 A0A0A0MQY5 61 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 ASAP2O43150 1006 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 RPP40O75818 363 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 NTSR2O95665 410 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 DAOP14920 347 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 KRT2P35908 639 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 VEGFCP49767 419 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 ACSM2AQ08AH3 577 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 SNTA1Q13424 505 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 OS9Q13438 667 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 MYBPC2Q14324 1141 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 BRD3Q15059 726 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 C14orf177Q52M58 125 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 HEPHL1Q6MZM0 1159 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 SLC30A9Q6PML9 568 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 C9orf139Q6ZV77 190 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 TRABD2AQ86V40 505 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 KLHDC8BQ8IXV7 354 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 SPEM1Q8N4L4 309 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 CCDC33Q8N5R6 958 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 MIGA1Q8NAN2 632 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 TMEM163Q8TC26 289 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 TBCBQ99426 244 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 ELAC2Q9BQ52 826 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 MECRQ9BV79 373 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 EGLN1Q9GZT9 426 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 LZTS1Q9Y250 596 aa3.53□□□□□ -1.84
CCDC88A-212ENST00000474059 GM2AP17900 193 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 SERPINB3P29508 390 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 MXI1P50539 228 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 AK2P54819 239 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 CTTNQ14247 550 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 IGFN1Q86VF2 1251 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 DPP10Q8N608 796 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 POC1AQ8NBT0 407 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 CTCFLQ8NI51 663 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 TNIP3Q96KP6 325 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 EPS8L2Q9H6S3 715 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 ARL15Q9NXU5 204 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 FNIP2Q9P278 1114 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 CA14Q9ULX7 337 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 RAP2CQ9Y3L5 183 aa3.52□□□□□ -1.85
CCDC88A-212ENST00000474059 ARID4BQ4LE39 1312 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 SAC3D1A6NKF1 404 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 APOL1O14791 398 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 ANXA6P08133 673 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 KLRK1P26718 216 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 HTR3AP46098 478 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 TM4SF4P48230 202 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 PRIM2P49643 509 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 MYBPHQ13203 477 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 IFIT5Q13325 482 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 PMS2P11Q13670 270 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 LONRF1Q17RB8 773 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 PMS2CLQ68D20 193 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 SRLQ86TD4 932 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 TMEM200AQ86VY9 491 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 MYD88Q99836 296 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 EIF2AQ9BY44 585 aaKnown RBP3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 MMP28Q9H239 520 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 NLRC4Q9NPP4 1024 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 TMEM248Q9NWD8 314 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 SLC45A1Q9Y2W3 748 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 COMMD10Q9Y6G5 202 aa3.51□□□□□ -1.85
CCDC88A-212ENST00000474059 IGLV5-37A0A075B6J1 123 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 ANTXRLA6NF34 631 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 HSPB6O14558 160 aa3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 TPD52L2O43399 206 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 TBX6O95947 436 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-212ENST00000474059 LDHAP00338 332 aaKnown RBP3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms