RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ARHGEF28Q8N1W1 1705 aaKnown RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 LINC00854A0A1B0GVQ3 168 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 RBM47A0AV96 593 aaKnown RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 STX16-NPEPL1H3BU86 382 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 STX16O14662 325 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 PCNAP12004 261 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 PEPDP12955 493 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 ACTR3P61158 418 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 DDX53Q86TM3 631 aaKnown RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 TMEM121Q9BTD3 319 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 NMRK2Q9NPI5 230 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 PEX16Q9Y5Y5 336 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 TRMUO75648 421 aaKnown RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 MAPK8P45983 427 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 CPT1AP50416 773 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 MRPS22P82650 360 aaKnown RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 NFE2Q16621 373 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 TRIM40Q6P9F5 258 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 DGCR6LQ9BY27 220 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 PSMD13Q9UNM6 376 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 RHAGQ02094 409 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 SEMA4AQ9H3S1 761 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 LRRC4BQ9NT99 713 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 DMGDHQ9UI17 866 aaKnown RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 CYP11B2P19099 503 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 CDK9P50750 372 aaKnown RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 METTL21CQ5VZV1 264 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 GPALPP1Q8IXQ4 340 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 TRIM2Q9C040 744 aa13.49□□□□□ -0.25
COL6A3-209ENST00000472056 FAM124BQ9H5Z6 455 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-209ENST00000472056 SNX4O95219 450 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PRG2P13727 222 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 LIPMQ5VYY2 423 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PACS1Q6VY07 963 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 B3GALNT2Q8NCR0 500 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF607Q96SK3 696 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 KCNH4Q9UQ05 1017 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ENTPD4Q9Y227 616 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 GPC6Q9Y625 555 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 A0A096LPK6 155 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 A0A1W2PQ72 361 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 KPNA3O00505 521 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 RPL10AP62906 217 aaKnown RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 MCFD2Q8NI22 146 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 WRNIP1Q96S55 665 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 KLF6Q99612 283 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 HOXA2O43364 376 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ORC5O43913 435 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PI16Q6UXB8 463 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 NKAPQ8N5F7 415 aaKnown RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PYDC1Q8WXC3 89 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 SLC9A7Q96T83 725 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 CGRRF1Q99675 332 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ABCB10Q9NRK6 738 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 TULP3O75386 442 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 UGT1A5P35504 534 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 FOLH1Q04609 750 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 BST2Q10589 180 aaKnown RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PRKG2Q13237 762 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 TMEM44Q2T9K0 475 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ULK3Q6PHR2 472 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 TPD52L3Q96J77 140 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 FUCA2Q9BTY2 467 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 SHROOM3Q8TF72 1996 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 IFNA7P01567 189 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 IGKV5-2P06315 115 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 CES1P23141 567 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ERP29P30040 261 aaKnown RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PLD1Q13393 1074 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 GH1P01241 217 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ATG14Q6ZNE5 492 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 NT5DC3Q86UY8 548 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PQLC1Q8N2U9 271 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 SMYD1Q8NB12 490 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 HTR3CQ8WXA8 447 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 NSUN4Q96CB9 384 aaKnown RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 DPP3Q9NY33 737 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 MED11Q9P086 117 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF222Q9UK12 451 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 NMT2O60551 498 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 APOL3O95236 402 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PDIA6Q15084 440 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 FAM189A2Q15884 450 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 PYHIN1Q6K0P9 492 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 ERICH5Q6P6B1 374 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 HHIPL2Q6UWX4 724 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 MAGEE2Q8TD90 523 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 EZH1Q92800 747 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-209ENST00000472056 MID1IP1Q9NPA3 183 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 TMEM260Q9NX78 707 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 GNPTGQ9UJJ9 305 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 DOLKQ9UPQ8 538 aa13.48□□□□□ -0.25
COL6A3-209ENST00000472056 SERPINB7O75635 380 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 CCNKO75909 580 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 MMP13P45452 471 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 AMPD2Q01433 879 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 PTF1AQ7RTS3 328 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 C12orf56Q8IXR9 622 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 ZNF540Q8NDQ6 660 aa13.47□□□□□ -0.25
COL6A3-209ENST00000472056 PRRG1O14668 218 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms