RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	ADGRF4	Q8IZF3	695 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	NFKBID	Q8NI38	313 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	NTN5	Q8WTR8	489 aa	Predicted RBP	4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	NOC3L	Q8WTT2	800 aa	Known RBP	4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	FAR1	Q8WVX9	515 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	CNOT9	Q92600	299 aa	Known RBP	4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	TUBB6	Q9BUF5	446 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	QTRT1	Q9BXR0	403 aa	Known RBP	4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	PRSS22	Q9GZN4	317 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	HIPK3	Q9H422	1215 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	EPHX3	Q9H6B9	360 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZNF304	Q9HCX3	659 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	SEMA4B	Q9NPR2	832 aa	Predicted RBP	4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	GRHL1	Q9NZI5	618 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	DHDH	Q9UQ10	334 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	LAMP3	Q9UQV4	416 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	SETD1B	Q9UPS6	1966 aa	Known RBP	4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	ITIH6	Q6UXX5	1313 aa		4.14	□□□□□ -1.75
PTCD3-209	ENST00000472044	TRBV5-7	A0A0A0MS05	114 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044		F5H0A9	414 aa	Predicted RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	TNPO2	O14787	897 aa	Known RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	TSPAN4	O14817	238 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	TLX3	O43711	291 aa	Predicted RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	SERPINC1	P01008	464 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	FBL	P22087	321 aa	Known RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	ARL1	P40616	181 aa	Predicted RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	SKIV2L2	P42285	1042 aa	Known RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	CPA2	P48052	419 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	BLK	P51451	505 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	SSBP2	P81877	361 aa	Predicted RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	ID2	Q02363	134 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	PKP1	Q13835	747 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	FAAH2	Q6GMR7	532 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	SYCE2	Q6PIF2	218 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	C17orf99	Q6UX52	265 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	H1FNT	Q75WM6	255 aa	Predicted RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	RSRC2	Q7L4I2	434 aa	Known RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	MAATS1	Q7Z4T9	603 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	IGFN1	Q86VF2	1251 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	MON1A	Q86VX9	555 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	DNAJC10	Q8IXB1	793 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	DDIAS	Q8IXT1	998 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	HSPH1	Q92598	858 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	HDAC2	Q92769	488 aa	Known RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	C7orf26	Q96N11	449 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	EYA3	Q99504	573 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	WDR83	Q9BRX9	315 aa	Known RBP	4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	IFT27	Q9BW83	186 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	SPAG4	Q9NPE6	437 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	ATP8A2	Q9NTI2	1148 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	RNF146	Q9NTX7	359 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	TMEM45A	Q9NWC5	275 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	ZDHHC7	Q9NXF8	308 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	PTGFRN	Q9P2B2	879 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	PNMA2	Q9UL42	364 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	CNPY2	Q9Y2B0	182 aa		4.13	□□□□□ -1.75
PTCD3-209	ENST00000472044	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	RHOD	O00212	210 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	KIF1C	O43896	1103 aa	Known RBP	4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	UGDH	O60701	494 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	ADA	P00813	363 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	UROD	P06132	367 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	SLC16A2	P36021	539 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	PAFAH1B1	P43034	410 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	PTPN9	P43378	593 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	NANOS3	P60323	173 aa	Known RBP	4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	PMPCA	Q10713	525 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	TRIP6	Q15654	476 aa	Known RBP	4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	SUPT20HL1	Q3ZLR7	823 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	PIK3CD-AS1	Q5SR53	167 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	UBAP2	Q5T6F2	1119 aa	Known RBP	4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	TBC1D9B	Q66K14	1250 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	C1orf122	Q6ZSJ8	110 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	PRSS45	Q7RTY3	260 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	KDELC2	Q7Z4H8	507 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	YTHDF3	Q7Z739	585 aa	Known RBP	4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	WDR5B	Q86VZ2	330 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	FAM185A	Q8N0U4	392 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	CPXM2	Q8N436	756 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	SLC44A5	Q8NCS7	719 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	CUL5	Q93034	780 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	COQ8B	Q96D53	544 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	CRAMP1	Q96RY5	1269 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	SCNM1	Q9BWG6	230 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	ACTR5	Q9H9F9	607 aa	Predicted RBP	4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	ENTPD7	Q9NQZ7	604 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	NLK	Q9UBE8	527 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	UTS2R	Q9UKP6	389 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	NAALADL1	Q9UQQ1	740 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044	KDM3A	Q9Y4C1	1321 aa		4.12	□□□□□ -1.75
PTCD3-209	ENST00000472044		A0A087X0M5	115 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044		A0A0G2JK05	382 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044		A0A1B0GX30	115 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044		A0A1W2PQM1	296 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	TARSL2	A2RTX5	802 aa	Known RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	SPTLC2	O15270	562 aa		4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	RNMT	O43148	476 aa	Known RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	RTN3	O95197	1032 aa	Predicted RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	DDX58	O95786	925 aa	Known RBP	4.11	□□□□□ -1.75
PTCD3-209	ENST00000472044	TBX18	O95935	607 aa		4.11	□□□□□ -1.75

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