RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 STK32AQ8WU08 396 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 VPS39Q96JC1 886 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 AFF4Q9UHB7 1163 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 RLFQ13129 1914 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 CHRNGP07510 517 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 HAPLN1P10915 354 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 ENO3P13929 434 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 GP5P40197 560 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 GRIK3Q13003 919 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 TCHHL1Q5QJ38 904 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 NAPEPLDQ6IQ20 393 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 SCIMPQ6UWF3 145 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 CARNMT1Q8N4J0 409 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 OR52K2Q8NGK3 314 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 USP13Q92995 863 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 SEMA3CQ99985 751 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 CATSPERBQ9H7T0 1116 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 PLLPQ9Y342 182 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 ERI2A8K979 691 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 E9PAM4 449 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 HAS3O00219 553 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 ANP32DO95626 131 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 ARSAP15289 507 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 WNT3AP56704 352 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 LRRC73Q5JTD7 316 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 OTOP2Q7RTS6 562 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 PPHLN1Q8NEY8 458 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC26A7Q8TE54 656 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 RAB3IPQ96QF0 476 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 WDR6Q9NNW5 1121 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 UXTQ9UBK9 157 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 C5orf60A6NFR6 353 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 GCATO75600 419 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 CIB2O75838 187 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 PRSS56P0CW18 603 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 POLD3Q15054 466 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 RTN4RL1Q86UN2 441 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 CNTD1Q8N815 330 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 KLHDC9Q8NEP7 349 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 TMA16Q96EY4 203 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 C20orf27Q9GZN8 174 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 CREBZFQ9NS37 354 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 ABCC13Q9NSE7 274 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 OSER1Q9NX31 292 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 AK5Q9Y6K8 562 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 SPECC1L-ADORA2AF8WAN1 911 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 GPC4O75487 556 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 HLA-DQB2P05538 268 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 MAP2K2P36507 400 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 ZRSR2Q15696 482 aaKnown RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 CLLU1OSQ5K130 101 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 DCLRE1AQ6PJP8 1040 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 NUP93Q8N1F7 819 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 GBP7Q8N8V2 638 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 FBXO27Q8NI29 283 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 ZSCAN18Q8TBC5 510 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 CATSPER2Q96P56 530 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 FRMD8P1Q9BZ68 369 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 CCDC68Q9H2F9 335 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC45A1Q9Y2W3 748 aa13.97□□□□□ -0.17
CCDC88A-211ENST00000471947 TMEM233B4DJY2 109 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 DPYSL4O14531 572 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 ADAM12O43184 909 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 RAMP2O60895 175 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 HDCP19113 662 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 INHBEP58166 350 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 CDH17Q12864 832 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 KPNB1Q14974 876 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 CLNKQ7Z7G1 428 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 HDAC10Q969S8 669 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 GRAMD1AQ96CP6 724 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 PCDHGC4Q9Y5F7 938 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 MOXD2PA6NHM9 499 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 SPAG6O75602 509 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 RFPL1O75677 317 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 COG7P83436 770 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 ZNF697Q5TEC3 545 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 OTUD1Q5VV17 481 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 TMEM198Q66K66 360 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 RNF19BQ6ZMZ0 732 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 HBEGFQ99075 208 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 TBL1YQ9BQ87 522 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 RTP3Q9BQQ7 232 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 ACBD6Q9BR61 282 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 OSBPL1AQ9BXW6 950 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 HS3ST4Q9Y661 456 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 PTCH2Q9Y6C5 1203 aa13.96□□□□□ -0.17
CCDC88A-211ENST00000471947 A0A0D9SEW6 157 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 TM9SF1O15321 606 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 UNC5CO95185 931 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 ALDOAP04075 364 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 MPSTP25325 297 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 PEX19P40855 299 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 NOGQ13253 232 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 RCN1Q15293 331 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 RTP2Q5QGT7 225 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 ZNF534Q76KX8 674 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 LRRC8DQ7L1W4 858 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 CNPY4Q8N129 248 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 NXNL1Q96CM4 212 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms