RNA–Protein interactions for RNA: ENST00000471455.1

CPSF4-211, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 569 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-211ENST00000471455 TLX3O43711 291 aaPredicted RBP9.39□□□□□ -0.91
CPSF4-211ENST00000471455 BRD2P25440 801 aaKnown RBP9.39□□□□□ -0.91
CPSF4-211ENST00000471455 ITPKBP27987 946 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 PCBP4P57723 403 aaKnown RBP9.39□□□□□ -0.91
CPSF4-211ENST00000471455 PPP2CBP62714 309 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 PPP2CAP67775 309 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 GCNT1Q02742 428 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF211Q13398 564 aaPredicted RBP9.39□□□□□ -0.91
CPSF4-211ENST00000471455 TBC1D25Q3MII6 688 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 CCDC40Q4G0X9 1142 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 FSCBQ5H9T9 825 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 RAP1GAP2Q684P5 730 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.39□□□□□ -0.91
CPSF4-211ENST00000471455 MMS22LQ6ZRQ5 1243 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF605Q86T29 641 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 TAC4Q86UU9 113 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 CFAP52Q8N1V2 620 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 DCBLD1Q8N8Z6 715 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF248Q8NDW4 579 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 CLEC4CQ8WTT0 213 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 STK32AQ8WU08 396 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 TFAP2BQ92481 460 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 ERCC4Q92889 916 aaPredicted RBP9.39□□□□□ -0.91
CPSF4-211ENST00000471455 PTPRN2Q92932 1015 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 KLHDC7BQ96G42 594 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 CRELD1Q96HD1 420 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 CEP63Q96MT8 703 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 FAM129BQ96TA1 746 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 LGMNQ99538 433 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF395Q9H8N7 513 aaPredicted RBP9.39□□□□□ -0.91
CPSF4-211ENST00000471455 FAM204AQ9H8W3 233 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 EBF2Q9HAK2 575 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 POPDC2Q9HBU9 364 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.39□□□□□ -0.91
CPSF4-211ENST00000471455 SLCO3A1Q9UIG8 710 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 NAALADL1Q9UQQ1 740 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 PCDHB11Q9Y5F2 797 aa9.39□□□□□ -0.91
CPSF4-211ENST00000471455 NYNRINQ9P2P1 1898 aaKnown RBP9.38□□□□□ -0.91
CPSF4-211ENST00000471455 SHROOM3Q8TF72 1996 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 GOLGA6L4A6NEF3 574 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 TTLL8A6PVC2 850 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 BRINP1O60477 761 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 TRUB2O95900 331 aaKnown RBP9.38□□□□□ -0.91
CPSF4-211ENST00000471455 PDGFRAP16234 1089 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF18P17022 549 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 CCR1P32246 355 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 DRD3P35462 400 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 PRCPP42785 496 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 PTGIRP43119 386 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 PLK1P53350 603 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 TMPRSS3P57727 454 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 YWHAZP63104 245 aaKnown RBP9.38□□□□□ -0.91
CPSF4-211ENST00000471455 ACCSLQ4AC99 568 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 ZC3H12AQ5D1E8 599 aaKnown RBP9.38□□□□□ -0.91
CPSF4-211ENST00000471455 NEK5Q6P3R8 708 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 APCDD1Q8J025 514 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 CCAR2Q8N163 923 aaKnown RBP9.38□□□□□ -0.91
CPSF4-211ENST00000471455 SMARCE1Q969G3 411 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 FAM131CQ96AQ9 280 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 RPL10LQ96L21 214 aaKnown RBP9.38□□□□□ -0.91
CPSF4-211ENST00000471455 FAM81BQ96LP2 452 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF578Q96N58 590 aaPredicted RBP9.38□□□□□ -0.91
CPSF4-211ENST00000471455 DEPDC7Q96QD5 511 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 USP29Q9HBJ7 922 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 DYRK4Q9NR20 520 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 CELSR3Q9NYQ7 3312 aa9.38□□□□□ -0.91
CPSF4-211ENST00000471455 SETXQ7Z333 2677 aaKnown RBP9.38□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF462Q96JM2 2506 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.37□□□□□ -0.91
CPSF4-211ENST00000471455 NEMP2A6NFY4 417 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 KCNU1A8MYU2 1149 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 WNT9AO14904 365 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 SIGLEC6O43699 453 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 ATP9BO43861 1147 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 MAN1A2O60476 641 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 RTN2O75298 545 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 MT-CO3P00414 261 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 FYNP06241 537 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 GP1BAP07359 652 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 GLI1P08151 1106 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 KRT5P13647 590 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 MAT2AP31153 395 aaKnown RBP9.37□□□□□ -0.91
CPSF4-211ENST00000471455 AKT2P31751 481 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 RPL34P49207 117 aaKnown RBP9.37□□□□□ -0.91
CPSF4-211ENST00000471455 STK19P49842 368 aaPredicted RBP9.37□□□□□ -0.91
CPSF4-211ENST00000471455 DUSP3P51452 185 aaPredicted RBP9.37□□□□□ -0.91
CPSF4-211ENST00000471455 CLDN6P56747 220 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 SNX16P57768 344 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 CXADRP78310 365 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 CDK17Q00537 523 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 INSM1Q01101 510 aaPredicted RBP9.37□□□□□ -0.91
CPSF4-211ENST00000471455 RHDQ02161 417 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 TLE3Q04726 772 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 CCDC173Q0VFZ6 552 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 BNIP3Q12983 259 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 ZNF177Q13360 481 aaPredicted RBP9.37□□□□□ -0.91
CPSF4-211ENST00000471455 PNOCQ13519 176 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 TAF1BQ53T94 588 aaPredicted RBP9.37□□□□□ -0.91
CPSF4-211ENST00000471455 ANKRD40Q6AI12 368 aa9.37□□□□□ -0.91
CPSF4-211ENST00000471455 KANSL1Q7Z3B3 1105 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms