RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 B3GNT6Q6ZMB0 384 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 TRIM67Q6ZTA4 783 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 CPNE9Q8IYJ1 553 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 P2RY11Q96G91 374 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 CSPG4P5Q96PW8 444 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 KCTD15Q96SI1 283 aaPredicted RBP12.66□□□□□ -0.38
HDAC4-208ENST00000463007 SLC39A3Q9BRY0 314 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 SYT17Q9BSW7 474 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 GTSE1Q9NYZ3 720 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 GMPR2Q9P2T1 348 aaKnown RBP12.66□□□□□ -0.38
HDAC4-208ENST00000463007 PSMD13Q9UNM6 376 aa12.66□□□□□ -0.38
HDAC4-208ENST00000463007 ZNF487B1APH4 448 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 IGHA2P01877 340 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 TFPTP0C1Z6 253 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 L1CAMP32004 1257 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 ARL4AP40617 200 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 ITGA7Q13683 1181 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 CYLC2Q14093 348 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-208ENST00000463007 XKR4Q5GH76 650 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 KRT80Q6KB66 452 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 TRIM74Q86UV6 250 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 TRIM73Q86UV7 250 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 NLRP7Q8WX94 980 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 CIB1Q99828 191 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 PRDM12Q9H4Q4 367 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 WDR41Q9HAD4 459 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 CDHR5Q9HBB8 845 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 CHRAC1Q9NRG0 131 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 MOCS1Q9NZB8 636 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 HSFX1Q9UBD0 423 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 TRPM7Q96QT4 1865 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 ATP6AP2A0A1C7CYW4 349 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 BCLAF3A2AJT9 711 aaKnown RBP12.65□□□□□ -0.38
HDAC4-208ENST00000463007 NEMP2A6NFY4 417 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 ATP6AP2O75787 350 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 STAMBPO95630 424 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 PRKCGP05129 697 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 C2P06681 752 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 TSHRP16473 764 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 TGM2P21980 687 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 GNL1P36915 607 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-208ENST00000463007 MAGEA6P43360 314 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 STT3AP46977 705 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 HNRNPDQ14103 355 aaKnown RBP12.65□□□□□ -0.38
HDAC4-208ENST00000463007 PDK2Q15119 407 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 KCTD21Q4G0X4 260 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 ARL13AQ5H913 290 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-208ENST00000463007 IL23RQ5VWK5 629 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 GK5Q6ZS86 529 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 LRRC52Q8N7C0 313 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 PRICKLE1Q96MT3 831 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-208ENST00000463007 EIF2AQ9BY44 585 aaKnown RBP12.65□□□□□ -0.38
HDAC4-208ENST00000463007 CDH19Q9H159 772 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 Q9H521 79 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 CCDC167Q9P0B6 97 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 TUBGCP4Q9UGJ1 667 aa12.65□□□□□ -0.38
HDAC4-208ENST00000463007 FAF1Q9UNN5 650 aaPredicted RBP12.65□□□□□ -0.38
HDAC4-208ENST00000463007 F2P00734 622 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 POLBP06746 335 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 DESP17661 470 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 RGS2P41220 211 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 DPP6P42658 865 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 ADARP55265 1226 aaKnown RBP12.65□□□□□ -0.39
HDAC4-208ENST00000463007 PPIDQ08752 370 aaKnown RBP12.65□□□□□ -0.39
HDAC4-208ENST00000463007 ARHGAP17Q68EM7 881 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF280DQ6N043 979 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 NPLOC4Q8TAT6 608 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 KBTBD7Q8WVZ9 684 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 JADE3Q92613 823 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 CENPIQ92674 756 aaPredicted RBP12.65□□□□□ -0.39
HDAC4-208ENST00000463007 CERS2Q96G23 380 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 KLHL32Q96NJ5 620 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 TBCBQ99426 244 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 APBA2Q99767 749 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 ILKAPQ9H0C8 392 aaPredicted RBP12.65□□□□□ -0.39
HDAC4-208ENST00000463007 CDY2AQ9Y6F7 541 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 CDY1Q9Y6F8 540 aa12.65□□□□□ -0.39
HDAC4-208ENST00000463007 LAMA3Q16787 3333 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 ZNF195O14628 629 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 FAM58BPP0C7Q3 252 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 CKMT2P17540 419 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 GRIA4P48058 902 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 FAM91A1Q658Y4 838 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 ITPRIPL1Q6GPH6 555 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 ARNTL2Q8WYA1 636 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 LRTOMTQ8WZ04 291 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 SLC10A4Q96EP9 437 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 PTPN18Q99952 460 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 TRIM8Q9BZR9 551 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 ATXN3LQ9H3M9 355 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 NMRAL1Q9HBL8 299 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 ZDHHC2Q9UIJ5 367 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 GLTPD2A6NH11 291 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 KCNU1A8MYU2 1149 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 RNASEH2AO75792 299 aaKnown RBP12.64□□□□□ -0.39
HDAC4-208ENST00000463007 SETSIPP0DME0 302 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 GRK2P25098 689 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 SLC6A3Q01959 620 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 IRF5Q13568 498 aa12.64□□□□□ -0.39
HDAC4-208ENST00000463007 MTX3Q5HYI7 312 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms