RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 TMEM191CA6NGB0 347 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 AKR1B15C9JRZ8 316 aaPredicted RBP14.93□□□□□ -0.02
USP39-206ENST00000448971 CREB3O43889 395 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 LRIG2O94898 1065 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 COPAP53621 1224 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 KRT83P78385 493 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 NRG1Q02297 640 aaPredicted RBP14.93□□□□□ -0.02
USP39-206ENST00000448971 RPL6Q02878 288 aaKnown RBP14.93□□□□□ -0.02
USP39-206ENST00000448971 CAMK2GQ13555 558 aaPredicted RBP14.93□□□□□ -0.02
USP39-206ENST00000448971 MANEALQ5VSG8 457 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 SLC36A4Q6YBV0 504 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 SLC41A1Q8IVJ1 513 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 CHCHD4Q8N4Q1 142 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 DCAF4L2Q8NA75 395 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 KDM1BQ8NB78 822 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 FNIP1Q8TF40 1166 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 MYO19Q96H55 970 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 EPAS1Q99814 870 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 FEM1AQ9BSK4 669 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 C2orf49Q9BVC5 232 aaPredicted RBP14.93□□□□□ -0.02
USP39-206ENST00000448971 NUP85Q9BW27 656 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 GTPBP2Q9BX10 602 aaKnown RBP14.93□□□□□ -0.02
USP39-206ENST00000448971 MTG2Q9H4K7 406 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 SUN2Q9UH99 717 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 ANAPC7Q9UJX3 599 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 FZD10Q9ULW2 581 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 AP4E1Q9UPM8 1137 aa14.93□□□□□ -0.02
USP39-206ENST00000448971 EDDM13A0A1B0GTR0 161 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 TTC34A8MYJ7 566 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 FAM72CH0Y354 149 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 ARHGAP33O14559 1287 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 PRPSAP2O60256 369 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 OPHN1O60890 802 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 GJB3O75712 270 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 TRIM16O95361 564 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 EPHB2P29323 1055 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 MAPKAPK2P49137 400 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 ZNF75DP51815 510 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 PLK1P53350 603 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 ARID5BQ14865 1188 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 SLC18A3Q16572 532 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 HNRNPA1L2Q32P51 320 aaKnown RBP14.92□□□□□ -0.02
USP39-206ENST00000448971 FAM72AQ5TYM5 149 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 ZNF776Q68DI1 518 aaPredicted RBP14.92□□□□□ -0.02
USP39-206ENST00000448971 FAM72DQ6L9T8 149 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 RAB44Q7Z6P3 723 aaPredicted RBP14.92□□□□□ -0.02
USP39-206ENST00000448971 FAM72BQ86X60 149 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 GAS2L3Q86XJ1 694 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 PYROXD2Q8N2H3 581 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 HDDC3Q8N4P3 179 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 MINDY1Q8N5J2 469 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 OR2I1PQ8NGU4 316 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 CTNNBL1Q8WYA6 563 aaPredicted RBP14.92□□□□□ -0.02
USP39-206ENST00000448971 ARHGEF26Q96DR7 871 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 CCDC42Q96M95 316 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 ATP13A1Q9HD20 1204 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 CD93Q9NPY3 652 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 PRSS16Q9NQE7 514 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 DNAAF2Q9NVR5 837 aaKnown RBP14.92□□□□□ -0.02
USP39-206ENST00000448971 GPATCH2LQ9NWQ4 482 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 PCSK1NQ9UHG2 260 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 CKAP5Q14008 2032 aa14.92□□□□□ -0.02
USP39-206ENST00000448971 A0A0D9SEW6 157 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 ILVBLA1L0T0 632 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 SNAP91O60641 907 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 RNASEH1O60930 286 aaKnown RBP14.91□□□□□ -0.02
USP39-206ENST00000448971 SIN3BO75182 1162 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 NDUFS2O75306 463 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 DNTTP04053 509 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 RHOQP17081 205 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 L1CAMP32004 1257 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 ATXN3P54252 364 aaPredicted RBP14.91□□□□□ -0.02
USP39-206ENST00000448971 GALCP54803 685 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 TPI1P60174 286 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 TTC31Q49AM3 519 aaPredicted RBP14.91□□□□□ -0.02
USP39-206ENST00000448971 ACCSLQ4AC99 568 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 ZNF783Q6ZMS7 281 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 RABEPKQ7Z6M1 372 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 ZNF354CQ86Y25 554 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 OR7D4Q8NG98 312 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 ZNF564Q8TBZ8 553 aaPredicted RBP14.91□□□□□ -0.02
USP39-206ENST00000448971 ALG14Q96F25 216 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 ZNF419Q96HQ0 510 aaPredicted RBP14.91□□□□□ -0.02
USP39-206ENST00000448971 MRFAP1L1Q96HT8 127 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 SPON2Q9BUD6 331 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 SNRNP25Q9BV90 132 aaKnown RBP14.91□□□□□ -0.02
USP39-206ENST00000448971 MAGEB5Q9BZ81 275 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 DHX35Q9H5Z1 703 aaKnown RBP14.91□□□□□ -0.02
USP39-206ENST00000448971 TMEM248Q9NWD8 314 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 CTTNBP2NLQ9P2B4 639 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 DNAI1Q9UI46 699 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 VPS51Q9UID3 782 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 SLCO3A1Q9UIG8 710 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 LHX6Q9UPM6 363 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 NEU3Q9UQ49 428 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 OR51B4Q9Y5P0 310 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 PLXNB3Q9ULL4 1909 aa14.91□□□□□ -0.02
USP39-206ENST00000448971 SMG1Q96Q15 3661 aaKnown RBP14.91□□□□□ -0.02
USP39-206ENST00000448971 KNTC1P50748 2209 aa14.9□□□□□ -0.02
USP39-206ENST00000448971 GOLGA4Q13439 2230 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms