RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NSD3Q9BZ95 1437 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 SETBP1Q9Y6X0 1596 aa4.52□□□□□ -1.69
VPS29-202ENST00000447578 KIF1BO60333 1816 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 EVC2Q86UK5 1308 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 PI4KAP2A4QPH2 592 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 E5RJQ4 531 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 DOK2O60496 412 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 TMEM63AO94886 807 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 SNHG28P0DPA3 235 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 MYCLP12524 364 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 DRD1P21728 446 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 RRM1P23921 792 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 CHMP24386 653 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 ABCD3P28288 659 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 PSMC2P35998 433 aaKnown RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 ANP32AP39687 249 aaKnown RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 PBX1P40424 430 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 RAD52P43351 418 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 TNNT2P45379 298 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 CCR9P51686 369 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 DRG2P55039 364 aaKnown RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 TIRAPP58753 221 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 ARF3P61204 181 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 RPP30P78346 268 aaKnown RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 ARF1P84077 181 aaKnown RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 TIAL1Q01085 375 aaKnown RBP eCLIP4.51□□□□□ -1.69
VPS29-202ENST00000447578 GALNT2Q10471 571 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 LAMB3Q13751 1172 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 IDI1Q13907 227 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 NFIL3Q16649 462 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 LY6KQ17RY6 165 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 ZNF484Q5JVG2 852 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 C20orf194Q5TEA3 1177 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 KIRREL2Q6UWL6 708 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 PIK3AP1Q6ZUJ8 805 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 IRF2BP2Q7Z5L9 587 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 IZUMO1Q8IYV9 350 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 SAMD14Q8IZD0 417 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 FAM71DQ8N9W8 422 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 RP9Q8TA86 221 aaKnown RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 TBC1D22AQ8WUA7 517 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 KTI12Q96EK9 354 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 LENG8Q96PV6 779 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 SERINC2Q96SA4 455 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 TMEM79Q9BSE2 394 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 CENPOQ9BU64 300 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 PLEKHA2Q9HB19 425 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 NKX1-2Q9UD57 310 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 STEAP1Q9UHE8 339 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 CNOT7Q9UIV1 285 aaKnown RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 HSF4Q9ULV5 492 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 PCDHA10Q9Y5I2 948 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 SNX14Q9Y5W7 946 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 YEATS2Q9ULM3 1422 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 DIP2CQ9Y2E4 1556 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 IFT172Q9UG01 1749 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 POLR3AO14802 1390 aaPredicted RBP4.51□□□□□ -1.69
VPS29-202ENST00000447578 MYOM1P52179 1685 aa4.51□□□□□ -1.69
VPS29-202ENST00000447578 CAMSAP1Q5T5Y3 1602 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 MYO3AQ8NEV4 1616 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 ADGRB1O14514 1584 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 INSIG1O15503 277 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CBFA2T3O75081 653 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 WDR47O94967 919 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CYP21A2P08686 494 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CYP2A6P11509 494 aaPredicted RBP4.5□□□□□ -1.69
VPS29-202ENST00000447578 ATP5F1P24539 256 aaPredicted RBP4.5□□□□□ -1.69
VPS29-202ENST00000447578 FPR3P25089 353 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 HTR7P34969 479 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 THBS4P35443 961 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 PLCD1P51178 756 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 LINC00205P59089 165 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 SETQ01105 290 aaPredicted RBP4.5□□□□□ -1.69
VPS29-202ENST00000447578 POU5F1Q01860 360 aaKnown RBP4.5□□□□□ -1.69
VPS29-202ENST00000447578 RNASELQ05823 741 aaKnown RBP4.5□□□□□ -1.69
VPS29-202ENST00000447578 SEMA3BQ13214 749 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 DCTN1Q14203 1278 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 ERV3-1Q14264 604 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CLCA4Q14CN2 919 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 ACOX1Q15067 660 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 LRRC24Q50LG9 513 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CFAP58Q5T655 872 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 NAA35Q5VZE5 725 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 ANKRD40Q6AI12 368 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CCDC144NLQ6NUI1 221 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 B4GALNT4Q76KP1 1039 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 METTL25Q8N6Q8 603 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 TERB1Q8NA31 727 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 ZMIZ2Q8NF64 920 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 ABHD11Q8NFV4 315 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 LINS1Q8NG48 757 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CFAP53Q96M91 514 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 THAP7Q9BT49 309 aaPredicted RBP4.5□□□□□ -1.69
VPS29-202ENST00000447578 DPCDQ9BVM2 203 aaPredicted RBP4.5□□□□□ -1.69
VPS29-202ENST00000447578 VN1R3Q9BXE9 311 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 LMAN2LQ9H0V9 348 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 CCDC68Q9H2F9 335 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 EBF3Q9H4W6 596 aa4.5□□□□□ -1.69
VPS29-202ENST00000447578 FBXO28Q9NVF7 368 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms