RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CLIP3Q96DZ5 547 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 ARMC7Q9H6L4 198 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 IL1RAPL1Q9NZN1 696 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 PACSIN3Q9UKS6 424 aa17.42■□□□□ 0.38
PTPRF-209ENST00000438120 NT5C1B-RDH14C9J2C7 533 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 EIF2S1P05198 315 aaKnown RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 MARSP56192 900 aaKnown RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ACAP1Q15027 740 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 IL17AQ16552 155 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ADPRHL2Q9NX46 363 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ZMPSTE24O75844 475 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 LDLRP01130 860 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 PABPC1P11940 636 aaKnown RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 HNF4AP41235 474 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 SREK1IP1Q8N9Q2 155 aaPredicted RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 POMGNT2Q8NAT1 580 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ACO2Q99798 780 aaKnown RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 C6orf62Q9GZU0 229 aaPredicted RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 HDHD2Q9H0R4 259 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 TNFSF13BQ9Y275 285 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 GOT1P17174 413 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 HECTD3Q5T447 861 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ITFG1Q8TB96 612 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 VAT1Q99536 393 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 OSBPL6Q9BZF3 934 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 FHDC1Q9C0D6 1143 aaPredicted RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.41■□□□□ 0.387e-8■■■□□ 14.8
PTPRF-209ENST00000438120 BAZ2BQ9UIF8 2168 aaKnown RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 SLIT1O75093 1534 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 A0A0A0MRY4 1105 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 CLOCKO15516 846 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 TOMM20Q15388 145 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 CNGA2Q16280 664 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 UGCGQ16739 394 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ARMCX4Q5H9R4 360 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 PCID2Q5JVF3 399 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 FBXO30Q8TB52 745 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 REPS1Q96D71 796 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 SPATA13Q96N96 652 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 DCUN1D5Q9BTE7 237 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 DNMT3LQ9UJW3 386 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 PEX11AO75192 247 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 CTSEP14091 401 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 CRATP43155 626 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ZNF143P52747 638 aaPredicted RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 THOP1P52888 689 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 MEA1Q16626 185 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 SCIMPQ6UWF3 145 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ATXN2LQ8WWM7 1075 aaKnown RBP17.41■□□□□ 0.38
PTPRF-209ENST00000438120 BTBD7Q9P203 1132 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 POLR1DQ9Y2S0 133 aa17.41■□□□□ 0.38
PTPRF-209ENST00000438120 ANKDD1BA6NHY2 528 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 SASH3O75995 380 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 DGKAP23743 735 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 RPL14P50914 215 aaKnown RBP17.4■□□□□ 0.38
PTPRF-209ENST00000438120 GTF2BQ00403 316 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 CDK16Q00536 496 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 CYP2A13Q16696 494 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 SELENOMQ8WWX9 145 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 MLPHQ9BV36 600 aaPredicted RBP17.4■□□□□ 0.38
PTPRF-209ENST00000438120 FAM237BA0A1B0GVD1 139 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 CCNB1P14635 433 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 ATP12AP54707 1039 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 SCARA3Q6AZY7 606 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 HDDC2Q7Z4H3 204 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 GPR142Q7Z601 462 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 OSCP1Q8WVF1 389 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 ABCG8Q9H221 673 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 PAIP2BQ9ULR5 123 aaKnown RBP17.4■□□□□ 0.38
PTPRF-209ENST00000438120 MAFO75444 373 aaPredicted RBP17.4■□□□□ 0.38
PTPRF-209ENST00000438120 ME2P23368 584 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 SNX30Q5VWJ9 437 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 PRMT9Q6P2P2 845 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 CXorf40AQ8TE69 158 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 PYDC1Q8WXC3 89 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 TRIM43BA6NCK2 446 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 SPATA31D3P0C874 917 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 CTPS1P17812 591 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 LRPAP1P30533 357 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 HPCAL1P37235 193 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 MIIPQ5JXC2 388 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 SPATA31D4Q6ZUB0 917 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 C19orf18Q8NEA5 215 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 ZNF558Q96NG5 402 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 A0A1B0GW55 424 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 DUX4L2P0CJ85 424 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 DUX4L3P0CJ86 424 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 DUX4L4P0CJ87 422 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 DUX4L5P0CJ88 424 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 DUX4L6P0CJ89 424 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 DUX4L7P0CJ90 424 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 CACNA2D1P54289 1103 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 INAQ16352 499 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 RAET1GQ6H3X3 334 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 LPCAT2Q7L5N7 544 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 IL22Q9GZX6 179 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 PAPOLBQ9NRJ5 636 aaKnown RBP17.4■□□□□ 0.38
PTPRF-209ENST00000438120 DUX4Q9UBX2 424 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 PCDHA11Q9Y5I1 949 aa17.4■□□□□ 0.38
PTPRF-209ENST00000438120 LIASO43766 372 aa17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms