RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 SH3RF2Q8TEC5 729 aa8.81□□□□□ -1
USP40-203ENST00000427112 TMEM40Q8WWA1 233 aa8.81□□□□□ -1
USP40-203ENST00000427112 LRTOMTQ8WZ04 291 aa8.81□□□□□ -1
USP40-203ENST00000427112 LRCH3Q96II8 777 aa8.81□□□□□ -1
USP40-203ENST00000427112 VPS39Q96JC1 886 aa8.81□□□□□ -1
USP40-203ENST00000427112 SPATA13Q96N96 652 aa8.81□□□□□ -1
USP40-203ENST00000427112 TSNARE1Q96NA8 513 aa8.81□□□□□ -1
USP40-203ENST00000427112 KLHL5Q96PQ7 755 aa8.81□□□□□ -1
USP40-203ENST00000427112 CENPKQ9BS16 269 aa8.81□□□□□ -1
USP40-203ENST00000427112 ACE2Q9BYF1 805 aaPredicted RBP8.81□□□□□ -1
USP40-203ENST00000427112 SMARCAD1Q9H4L7 1026 aa8.81□□□□□ -1
USP40-203ENST00000427112 DNAH14Q0VDD8 3507 aa8.8□□□□□ -1
USP40-203ENST00000427112 C22orf31O95567 290 aa8.8□□□□□ -1
USP40-203ENST00000427112 CLPTM1O96005 669 aa8.8□□□□□ -1
USP40-203ENST00000427112 PRKCHP24723 683 aa8.8□□□□□ -1
USP40-203ENST00000427112 GABRB2P47870 512 aa8.8□□□□□ -1
USP40-203ENST00000427112 YBX1P67809 324 aaKnown RBP8.8□□□□□ -1
USP40-203ENST00000427112 TUBB3Q13509 450 aa8.8□□□□□ -1
USP40-203ENST00000427112 IL23RQ5VWK5 629 aa8.8□□□□□ -1
USP40-203ENST00000427112 OSTM1Q86WC4 334 aa8.8□□□□□ -1
USP40-203ENST00000427112 LILRA2Q8N149 483 aa8.8□□□□□ -1
USP40-203ENST00000427112 BHMTQ93088 406 aa8.8□□□□□ -1
USP40-203ENST00000427112 SMIM14Q96QK8 99 aa8.8□□□□□ -1
USP40-203ENST00000427112 TNFRSF12AQ9NP84 129 aa8.8□□□□□ -1
USP40-203ENST00000427112 ERAP1Q9NZ08 941 aa8.8□□□□□ -1
USP40-203ENST00000427112 GNEQ9Y223 722 aaKnown RBP8.8□□□□□ -1
USP40-203ENST00000427112 CLEC11AQ9Y240 323 aa8.8□□□□□ -1
USP40-203ENST00000427112 TNFSF13BQ9Y275 285 aa8.8□□□□□ -1
USP40-203ENST00000427112 ZNF638Q14966 1978 aaKnown RBP8.8□□□□□ -1
USP40-203ENST00000427112 KNL1Q8NG31 2342 aa8.8□□□□□ -1
USP40-203ENST00000427112 MDM4O15151 490 aa8.8□□□□□ -1
USP40-203ENST00000427112 PIGRP01833 764 aa8.8□□□□□ -1
USP40-203ENST00000427112 OR4Q2P0C623 313 aa8.8□□□□□ -1
USP40-203ENST00000427112 BCAT1P54687 386 aa8.8□□□□□ -1
USP40-203ENST00000427112 ECT2LQ008S8 904 aa8.8□□□□□ -1
USP40-203ENST00000427112 PLOD1Q02809 727 aaPredicted RBP8.8□□□□□ -1
USP40-203ENST00000427112 WASHC5Q12768 1159 aa8.8□□□□□ -1
USP40-203ENST00000427112 MAP7Q14244 749 aa8.8□□□□□ -1
USP40-203ENST00000427112 CEP97Q8IW35 865 aa8.8□□□□□ -1
USP40-203ENST00000427112 TRIM42Q8IWZ5 723 aa8.8□□□□□ -1
USP40-203ENST00000427112 OFCC1Q8IZS5 231 aa8.8□□□□□ -1
USP40-203ENST00000427112 TRIML2Q8N7C3 387 aa8.8□□□□□ -1
USP40-203ENST00000427112 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.8□□□□□ -1
USP40-203ENST00000427112 PPP2R3CQ969Q6 453 aa8.8□□□□□ -1
USP40-203ENST00000427112 TUBB6Q9BUF5 446 aa8.8□□□□□ -1
USP40-203ENST00000427112 FICDQ9BVA6 458 aa8.8□□□□□ -1
USP40-203ENST00000427112 C2orf40Q9H1Z8 148 aa8.8□□□□□ -1
USP40-203ENST00000427112 NOL11Q9H8H0 719 aaKnown RBP8.8□□□□□ -1
USP40-203ENST00000427112 TMEM30AQ9NV96 361 aa8.8□□□□□ -1
USP40-203ENST00000427112 PRMT7Q9NVM4 692 aaPredicted RBP8.8□□□□□ -1
USP40-203ENST00000427112 RBPJLQ9UBG7 517 aa8.8□□□□□ -1
USP40-203ENST00000427112 MYBPHLA2RUH7 354 aa8.8□□□□□ -1
USP40-203ENST00000427112 PLOD2O00469 737 aa8.8□□□□□ -1
USP40-203ENST00000427112 GPC4O75487 556 aa8.8□□□□□ -1
USP40-203ENST00000427112 PRSS56P0CW18 603 aa8.8□□□□□ -1
USP40-203ENST00000427112 KCNA5P22460 613 aa8.8□□□□□ -1
USP40-203ENST00000427112 CCNG1P51959 295 aa8.8□□□□□ -1
USP40-203ENST00000427112 RBM20Q5T481 1227 aaKnown RBP8.8□□□□□ -1
USP40-203ENST00000427112 PDSS2Q86YH6 399 aa8.8□□□□□ -1
USP40-203ENST00000427112 SCAMP5Q8TAC9 235 aa8.8□□□□□ -1
USP40-203ENST00000427112 SLC35F5Q8WV83 523 aa8.8□□□□□ -1
USP40-203ENST00000427112 EZH1Q92800 747 aaPredicted RBP8.8□□□□□ -1
USP40-203ENST00000427112 KLHL32Q96NJ5 620 aa8.8□□□□□ -1
USP40-203ENST00000427112 WDR41Q9HAD4 459 aa8.8□□□□□ -1
USP40-203ENST00000427112 NDFIP2Q9NV92 336 aa8.8□□□□□ -1
USP40-203ENST00000427112 BTRCQ9Y297 605 aa8.8□□□□□ -1
USP40-203ENST00000427112 ASB3Q9Y575 518 aa8.8□□□□□ -1
USP40-203ENST00000427112 COL11A1P12107 1806 aaPredicted RBP8.8□□□□□ -1
USP40-203ENST00000427112 MGAMO43451 1857 aa8.79□□□□□ -1
USP40-203ENST00000427112 TTC36A6NLP5 189 aa8.79□□□□□ -1
USP40-203ENST00000427112 AKAP10O43572 662 aa8.79□□□□□ -1
USP40-203ENST00000427112 HBP1O60381 514 aa8.79□□□□□ -1
USP40-203ENST00000427112 HUS1O60921 280 aa8.79□□□□□ -1
USP40-203ENST00000427112 SNNO75324 88 aaPredicted RBP8.79□□□□□ -1
USP40-203ENST00000427112 ENDOD1O94919 500 aa8.79□□□□□ -1
USP40-203ENST00000427112 CRTAMO95727 393 aa8.79□□□□□ -1
USP40-203ENST00000427112 GSTA2P09210 222 aa8.79□□□□□ -1
USP40-203ENST00000427112 UQCRBP14927 111 aa8.79□□□□□ -1
USP40-203ENST00000427112 TFEBP19484 476 aa8.79□□□□□ -1
USP40-203ENST00000427112 CDH5P33151 784 aaPredicted RBP8.79□□□□□ -1
USP40-203ENST00000427112 GP5P40197 560 aa8.79□□□□□ -1
USP40-203ENST00000427112 TTLL4Q14679 1199 aa8.79□□□□□ -1
USP40-203ENST00000427112 PDK2Q15119 407 aa8.79□□□□□ -1
USP40-203ENST00000427112 KIF19Q2TAC6 998 aa8.79□□□□□ -1
USP40-203ENST00000427112 ZNF470Q6ECI4 717 aa8.79□□□□□ -1
USP40-203ENST00000427112 PIM3Q86V86 326 aa8.79□□□□□ -1
USP40-203ENST00000427112 FBXW8Q8N3Y1 598 aa8.79□□□□□ -1
USP40-203ENST00000427112 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.79□□□□□ -1
USP40-203ENST00000427112 OR52K2Q8NGK3 314 aa8.79□□□□□ -1
USP40-203ENST00000427112 ZNF398Q8TD17 642 aa8.79□□□□□ -1
USP40-203ENST00000427112 PABPC5Q96DU9 382 aaKnown RBP8.79□□□□□ -1
USP40-203ENST00000427112 CMTM5Q96DZ9 223 aa8.79□□□□□ -1
USP40-203ENST00000427112 CDCA5Q96FF9 252 aa8.79□□□□□ -1
USP40-203ENST00000427112 HAUS8Q9BT25 410 aa8.79□□□□□ -1
USP40-203ENST00000427112 VCX3BQ9H321 246 aa8.79□□□□□ -1
USP40-203ENST00000427112 UTP6Q9NYH9 597 aaKnown RBP8.79□□□□□ -1
USP40-203ENST00000427112 DOLKQ9UPQ8 538 aa8.79□□□□□ -1
USP40-203ENST00000427112 KCTD3Q9Y597 815 aa8.79□□□□□ -1
USP40-203ENST00000427112 MAGEC1O60732 1142 aa8.79□□□□□ -1
USP40-203ENST00000427112 TRIM13O60858 407 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms