RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TAGLNQ01995 201 aaKnown RBP9.98□□□□□ -0.81
USP54-205ENST00000424265 CDK18Q07002 472 aa9.98□□□□□ -0.81
USP54-205ENST00000424265 PIGHQ14442 188 aaPredicted RBP9.98□□□□□ -0.81
USP54-205ENST00000424265 CNKSR3Q6P9H4 555 aa9.98□□□□□ -0.81
USP54-205ENST00000424265 NPAS4Q8IUM7 802 aa9.98□□□□□ -0.81
USP54-205ENST00000424265 LZTR1Q8N653 840 aa9.98□□□□□ -0.81
USP54-205ENST00000424265 MCRS1Q96EZ8 462 aa9.98□□□□□ -0.81
USP54-205ENST00000424265 RILPQ96NA2 401 aa9.98□□□□□ -0.81
USP54-205ENST00000424265 ANAPC7Q9UJX3 599 aa9.98□□□□□ -0.81
USP54-205ENST00000424265 PRG3Q9Y2Y8 225 aaPredicted RBP9.98□□□□□ -0.81
USP54-205ENST00000424265 STYXL1Q9Y6J8 313 aa9.98□□□□□ -0.81
USP54-205ENST00000424265 MAGEB16A2A368 324 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 F8W8V4 182 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 H3BUI4 141 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 PITPNM1O00562 1244 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 TSPAN4O14817 238 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 ENO1P06733 434 aaKnown RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 PSMC3P17980 439 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 RPL26P61254 145 aaKnown RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 DCAF6Q58WW2 860 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 GLRA4Q5JXX5 417 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 EEF1DP3Q658K8 133 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 RIPOR1Q6ZS17 1223 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 HORMAD1Q86X24 394 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 ANKRD53Q8N9V6 530 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 MINDY2Q8NBR6 621 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 PPP4R1Q8TF05 950 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 CHID1Q9BWS9 393 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 FANCEQ9HB96 536 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 FANCFQ9NPI8 374 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 TMEM161AQ9NX61 479 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 SLC30A1Q9Y6M5 507 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 RCCD1A6NED2 376 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A9O60656 530 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 FKBP9O95302 570 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 OAS1P00973 400 aaKnown RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A6P19224 532 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A1P22309 533 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A4P22310 534 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 WEE1P30291 646 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A3P35503 534 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A5P35504 534 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 GRIK1P39086 918 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 CPA2P48052 419 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 EMP3P54852 163 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 YWHAHQ04917 246 aaPredicted RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 SLC45A4Q5BKX6 768 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 BTBD8Q5XKL5 378 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 OVOS1Q6IE37 1185 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 GAD1Q99259 594 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 EMILIN2Q9BXX0 1053 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A7Q9HAW7 530 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A10Q9HAW8 530 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UGT1A8Q9HAW9 530 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 MBLAC1A4D2B0 266 aaPredicted RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 FUCA1P04066 466 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 PRKCIP41743 596 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 CBX5P45973 191 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 ALDH1A3P47895 512 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 EPHB1P54762 984 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 DAB2P98082 770 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 GDF6Q6KF10 455 aaPredicted RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 RAPH1Q70E73 1250 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 ADAT2Q7Z6V5 191 aaKnown RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 PDSS2Q86YH6 399 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 SLC25A41Q8N5S1 370 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 LRRC20Q8TCA0 184 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 TLR10Q9BXR5 811 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 ELOVL4Q9GZR5 314 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 SLC35C2Q9NQQ7 365 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 UBA2Q9UBT2 640 aaPredicted RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 ZNHIT2Q9UHR6 403 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 BRCA1P38398 1863 aaKnown RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 GPC4O75487 556 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 IFRD2Q12894 506 aaPredicted RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 CTXN3Q4LDR2 81 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 SEZ6Q53EL9 994 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 ACAD10Q6JQN1 1059 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 LSMEM2Q8N112 164 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 FBXL18Q96ME1 805 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 SLITRK1Q96PX8 696 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 LIN28AQ9H9Z2 209 aaKnown RBP9.97□□□□□ -0.81
USP54-205ENST00000424265 MSRAQ9UJ68 235 aa9.97□□□□□ -0.81
USP54-205ENST00000424265 A0A0A6YYK5 440 aaPredicted RBP9.96□□□□□ -0.81
USP54-205ENST00000424265 C2orf81A6NN90 581 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 FADS2P1A8MWK0 482 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 DLGAP3O95886 979 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 NUDT17P0C025 328 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 GLULP15104 373 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 CYP11B1P15538 503 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 CFL1P23528 166 aaKnown RBP9.96□□□□□ -0.81
USP54-205ENST00000424265 AKAP5P24588 427 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 AQP4P55087 323 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 BST2Q10589 180 aaKnown RBP9.96□□□□□ -0.81
USP54-205ENST00000424265 TRIP13Q15645 432 aaPredicted RBP9.96□□□□□ -0.81
USP54-205ENST00000424265 GOLGA7BQ2TAP0 167 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 SDE2Q6IQ49 451 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 RHOT1Q8IXI2 618 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 TMEM79Q9BSE2 394 aa9.96□□□□□ -0.81
USP54-205ENST00000424265 AVENQ9NQS1 362 aaPredicted RBP9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms