RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SLC39A8Q9C0K1 460 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 LRRC19Q9H756 370 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 PRDM16Q9HAZ2 1276 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 ETNK2Q9NVF9 386 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 RCOR3Q9P2K3 495 aaPredicted RBP12.75□□□□□ -0.37
SKA1-203ENST00000417656 SUN2Q9UH99 717 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 ADGRG1Q9Y653 693 aa12.75□□□□□ -0.37
SKA1-203ENST00000417656 MACROD2A1Z1Q3 448 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 DFFAO00273 331 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 KDELR3O43731 214 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 MFSD11O43934 449 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 BNIP3LO60238 219 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 CD160O95971 181 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 BCKDHBP21953 392 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 IL4RP24394 825 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 MARCKSL1P49006 195 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 VASPP50552 380 aaPredicted RBP12.74□□□□□ -0.37
SKA1-203ENST00000417656 NDST2P52849 883 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 KIF5AQ12840 1032 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 SERINC3Q13530 473 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 PDK2Q15119 407 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 DLG2Q15700 870 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 AFMIDQ63HM1 303 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 TMCO3Q6UWJ1 677 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 PRR23BQ6ZRT6 265 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 DAAM2Q86T65 1068 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 TMPRSS6Q8IU80 811 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 TP53INP2Q8IXH6 220 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 RHOT1Q8IXI2 618 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 STK40Q8N2I9 435 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 TXLNBQ8N3L3 684 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 FAM160A2Q8N612 972 aaPredicted RBP12.74□□□□□ -0.37
SKA1-203ENST00000417656 FRMD1Q8N878 549 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 RAPGEF5Q92565 580 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 PRCCQ92733 491 aaPredicted RBP12.74□□□□□ -0.37
SKA1-203ENST00000417656 PTPRN2Q92932 1015 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 FBRSQ9HAH7 460 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 DONSONQ9NYP3 566 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 HPCAL4Q9UM19 191 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 FCF1Q9Y324 198 aaKnown RBP12.74□□□□□ -0.37
SKA1-203ENST00000417656 ALG6Q9Y672 507 aa12.74□□□□□ -0.37
SKA1-203ENST00000417656 TARSL2A2RTX5 802 aaKnown RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 GRID2IPA4D2P6 1211 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 ARHGAP42A6NI28 874 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 PSTPIP1O43586 416 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 KDELR1P24390 212 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 CNR2P34972 360 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 P2RY2P41231 377 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 PSMD8P48556 350 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 PAPOLAP51003 745 aaKnown RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 RPS14P62263 151 aaKnown RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 SIM2Q14190 667 aaPredicted RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 ELAVL3Q14576 367 aaKnown RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 LPAL2Q16609 132 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 MAP7D1Q3KQU3 841 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 USP39Q53GS9 565 aaKnown RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 ANKRD20A8PQ5CZ79 823 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 LRRC38Q5VT99 294 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 ZNF776Q68DI1 518 aaPredicted RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 NCBP2-AS2Q69YL0 99 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 ARHGAP36Q6ZRI8 547 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 CEP68Q76N32 757 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 PCDH19Q8TAB3 1148 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 ANP32BQ92688 251 aaKnown RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 FAF2Q96CS3 445 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 SIPA1Q96FS4 1042 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 SPACA7Q96KW9 195 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 TM6SF2Q9BZW4 377 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 RSPH9Q9H1X1 276 aaPredicted RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 EPC1Q9H2F5 836 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 TNKS2Q9H2K2 1166 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 PDFQ9HBH1 243 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 USP36Q9P275 1121 aaKnown RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 CYP8B1Q9UNU6 501 aa12.73□□□□□ -0.37
SKA1-203ENST00000417656 SMG5Q9UPR3 1016 aaKnown RBP12.73□□□□□ -0.37
SKA1-203ENST00000417656 NUP205Q92621 2012 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 IGHV1OR15-9A0A0B4J2B8 117 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 ZSCAN5CA6NGD5 496 aaPredicted RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 C3orf70A6NLC5 250 aaPredicted RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 J3KR12 359 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 NRDCO43847 1150 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 TMCC1O94876 653 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 SERPINB6P35237 376 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 GEMIN4P57678 1058 aaKnown RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 GSE1Q14687 1217 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 KBTBD6Q86V97 674 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 MMAAQ8IVH4 418 aaKnown RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 MAP7D3Q8IWC1 876 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 LZTR1Q8N653 840 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 PCDH20Q8N6Y1 951 aaKnown RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 PQLC3Q8N755 202 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 LRRC57Q8N9N7 239 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 OR8D1Q8WZ84 308 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 KRT35Q92764 455 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 NKD2Q969F2 451 aaPredicted RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 RNF25Q96BH1 459 aaPredicted RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 CALR3Q96L12 384 aaKnown RBP12.72□□□□□ -0.37
SKA1-203ENST00000417656 CEP44Q9C0F1 390 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 SP110Q9HB58 689 aa12.72□□□□□ -0.37
SKA1-203ENST00000417656 DDX56Q9NY93 547 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms