RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 DEFB103AP81534 67 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 GAD2Q05329 585 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 AUHQ13825 339 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 USP10Q14694 798 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 GRAMD4Q6IC98 578 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 SERPINA13PQ6UXR4 307 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 ALKAL1Q6UXT8 129 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 ZNF598Q86UK7 904 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 MYLK4Q86YV6 388 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 CRLF3Q8IUI8 442 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 ALLCQ8N6M5 410 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 LPCAT1Q8NF37 534 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 RFWD2Q8NHY2 731 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 KBTBD7Q8WVZ9 684 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 CDCA3Q99618 268 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 VPS45Q9NRW7 570 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 A0A0U1RQJ8 604 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 A0A1W2PQ67 120 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 A0A1W2PRU2 124 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 INPPL1O15357 1258 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 DDX3YO15523 660 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 TIMM44O43615 452 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 FAM107AO95990 144 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 C1RP00736 705 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 NDST2P52849 883 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 WNT7BP56706 349 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 NKX3-2P78367 333 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 TCEAL1Q15170 157 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 DPYSL2Q16555 572 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 SYTL3Q4VX76 610 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 XKR4Q5GH76 650 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 RTP2Q5QGT7 225 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 FAM46CQ5VWP2 391 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 ARCQ7LC44 396 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 FBXO36Q8NEA4 188 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 CEP70Q8NHQ1 597 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 KCTD15Q96SI1 283 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 TBL1YQ9BQ87 522 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 RHOBTB2Q9BYZ6 727 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 TMBIM4Q9HC24 238 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 DUS2Q9NX74 493 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 MPP6Q9NZW5 540 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 SCHIP1Q9P0W5 487 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 FZD10Q9ULW2 581 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 MYO1CO00159 1063 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 KDM1AO60341 852 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 APODP05090 189 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 LSP1P33241 339 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 HCAR3P49019 387 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 MRPS15P82914 257 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 SLC20A2Q08357 652 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 DYNC1I2Q13409 638 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 KRT72Q14CN4 511 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 ADGRF1Q5T601 910 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 OTOP3Q7RTS5 596 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 RTL3Q8N8U3 475 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 OR10T2Q8NGX3 314 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 TIFAQ96CG3 184 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 ELAC2Q9BQ52 826 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 C1QTNF7Q9BXJ2 289 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 DDX28Q9NUL7 540 aaKnown RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 ETNK2Q9NVF9 386 aa8.67□□□□□ -1.02
SYNE1-211ENST00000413186 RPH3AQ9Y2J0 694 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-211ENST00000413186 CCDC78A2IDD5 438 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 KPNA3O00505 521 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-211ENST00000413186 TEX28O15482 410 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 S100A9P06702 114 aaKnown RBP8.66□□□□□ -1.02
SYNE1-211ENST00000413186 HIST1H2AGP0C0S8 130 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-211ENST00000413186 HIST1H2ADP20671 130 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 CNTFP26441 200 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 C11orf88Q6PI97 169 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 USP45Q70EL2 814 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 SLC43A3Q8NBI5 491 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 CLEC4CQ8WTT0 213 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 NKD2Q969F2 451 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-211ENST00000413186 HIST1H2AHQ96KK5 128 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 HIST1H2AJQ99878 128 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 APOL2Q9BQE5 337 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 H2AFJQ9BTM1 129 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 SFXN1Q9H9B4 322 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 ARHGEF4Q9NR80 690 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 PCDHA11Q9Y5I1 949 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 NEDD8-MDP1E9PL57 170 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 TULP2O00295 520 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 MEFVO15553 781 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-211ENST00000413186 DSC1Q08554 894 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 MGAT5Q09328 741 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 CELF5Q8N6W0 485 aaKnown RBP8.66□□□□□ -1.02
SYNE1-211ENST00000413186 PLD5Q8N7P1 536 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 CCT8L2Q96SF2 557 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 NPY6RQ99463 290 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 TRABDQ9H4I3 376 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 MRGBPQ9NV56 204 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 UBP1Q9NZI7 540 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 SCAMP3O14828 347 aaKnown RBP8.66□□□□□ -1.02
SYNE1-211ENST00000413186 CXCL10P02778 98 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 CA3P07451 260 aa8.66□□□□□ -1.02
SYNE1-211ENST00000413186 HOXB8P17481 243 aaPredicted RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms