RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZSCAN18Q8TBC5 510 aaPredicted RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 FBXO41Q8TF61 875 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 PDCD6IPQ8WUM4 868 aaKnown RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 NXNL1Q96CM4 212 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 LRRC39Q96DD0 335 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 SMARCD1Q96GM5 515 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 PANX3Q96QZ0 392 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 IDH3AP50213 366 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 ABCE1P61221 599 aaKnown RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 PRPSAP1Q14558 356 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 ZNF789Q5FWF6 425 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 MAVSQ7Z434 540 aa13.63□□□□□ -0.23
VPS54-203ENST00000409558 PPP1R10Q96QC0 940 aaKnown RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 SEPT5Q99719 369 aaPredicted RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 C11orf84Q9BUA3 381 aaPredicted RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 SSU72Q9NP77 194 aaKnown RBP13.63□□□□□ -0.23
VPS54-203ENST00000409558 SERPINE1P05121 402 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 LMNTD2Q8IXW0 634 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 TOP6BLQ8N6T0 577 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 GATA5Q9BWX5 397 aaPredicted RBP13.62□□□□□ -0.23
VPS54-203ENST00000409558 SLC39A8Q9C0K1 460 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 TRPV6Q9H1D0 765 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 ZNF180Q9UJW8 692 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 A0A1W2PQH9 124 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 RBM47A0AV96 593 aaKnown RBP13.62□□□□□ -0.23
VPS54-203ENST00000409558 MBLAC1A4D2B0 266 aaPredicted RBP13.62□□□□□ -0.23
VPS54-203ENST00000409558 ASGR1P07306 291 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 FLT3LGP49771 235 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 SLC5A3P53794 718 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 CAPRIN2Q6IMN6 1127 aaKnown RBP13.62□□□□□ -0.23
VPS54-203ENST00000409558 TLDC1Q6P9B6 456 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 MIEF2Q96C03 454 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 SPON2Q9BUD6 331 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 XPR1Q9UBH6 696 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 DERAQ9Y315 318 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 KCTD3Q9Y597 815 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 BPTFQ12830 3046 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 WARSP23381 471 aaKnown RBP13.62□□□□□ -0.23
VPS54-203ENST00000409558 GRIA4P48058 902 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 COPAP53621 1224 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 ASPHQ12797 758 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 CRHR2Q13324 411 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 DPYSQ14117 519 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 PSMD5Q16401 504 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 FRMD7Q6ZUT3 714 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 ZNF419Q96HQ0 510 aaPredicted RBP13.62□□□□□ -0.23
VPS54-203ENST00000409558 SLC45A3Q96JT2 553 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 IL1RL2Q9HB29 575 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 NMUR1Q9HB89 426 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 FETUBQ9UGM5 382 aa13.62□□□□□ -0.23
VPS54-203ENST00000409558 ZNF638Q14966 1978 aaKnown RBP13.62□□□□□ -0.23
VPS54-203ENST00000409558 MAP3K7O43318 606 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 AP2A1O95782 977 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 KCNE1P15382 129 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 PCSK1P29120 753 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 TMPRSS6Q8IU80 811 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 TRPV1Q8NER1 839 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 ACE2Q9BYF1 805 aaPredicted RBP13.61□□□□□ -0.23
VPS54-203ENST00000409558 FRMD8Q9BZ67 464 aaPredicted RBP13.61□□□□□ -0.23
VPS54-203ENST00000409558 SPC25Q9HBM1 224 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 DCDC2Q9UHG0 476 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 AHSGP02765 367 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 CA8P35219 290 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 LHX1P48742 406 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 GATMP50440 423 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 ARHGAP24Q8N264 748 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 GIPC2Q8TF65 315 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 C7orf26Q96N11 449 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 SMIM14Q96QK8 99 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 NACA2Q9H009 215 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 PNPLA8Q9NP80 782 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 CDH23Q9H251 3354 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 J3KR12 359 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 STAU1O95793 577 aaKnown RBP13.61□□□□□ -0.23
VPS54-203ENST00000409558 CTGFP29279 349 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 TSPY1Q01534 308 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 NIPAL4Q0D2K0 466 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 ARL13AQ5H913 290 aaPredicted RBP13.61□□□□□ -0.23
VPS54-203ENST00000409558 EP400NLQ6ZTU2 488 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 SNX32Q86XE0 403 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 KBTBD2Q8IY47 623 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 BLOC1S5Q8TDH9 187 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 LENG8Q96PV6 779 aaPredicted RBP13.61□□□□□ -0.23
VPS54-203ENST00000409558 TRPV2Q9Y5S1 764 aa13.61□□□□□ -0.23
VPS54-203ENST00000409558 DPPA5A6NC42 116 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 ZBTB14O43829 449 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 CNTN5O94779 1100 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 MAGEA3P43357 314 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 CDH13P55290 713 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 HABP4Q5JVS0 413 aaKnown RBP13.6□□□□□ -0.23
VPS54-203ENST00000409558 RBM20Q5T481 1227 aaKnown RBP13.6□□□□□ -0.23
VPS54-203ENST00000409558 RBBP8Q99708 897 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 GORASP1Q9BQQ3 440 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 PRM3Q9NNZ6 103 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 BRCA1P38398 1863 aaKnown RBP13.6□□□□□ -0.23
VPS54-203ENST00000409558 HACD1B0YJ81 288 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 ODC1P11926 461 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 RGS2P41220 211 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 CD86P42081 329 aa13.6□□□□□ -0.23
VPS54-203ENST00000409558 MGAT5BQ3V5L5 792 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms