RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 P2RY13Q9BPV8 354 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 CEP41Q9BYV8 373 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 SLC25A13Q9UJS0 675 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 XIRP2A4UGR9 3374 aa18.43■□□□□ 0.54
SDC1-203ENST00000403076 C5orf42Q9H799 3197 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 RNF103O00237 685 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 TTI1O43156 1089 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 ZMPSTE24O75844 475 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 KRT14P02533 472 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 ATP5BP06576 529 aaKnown RBP18.42■□□□□ 0.54
SDC1-203ENST00000403076 BMP1P13497 986 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 CTHP32929 405 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 GRIA2P42262 883 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 GALK1P51570 392 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 RENBPP51606 427 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 ARF5P84085 180 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 HNRNPDQ14103 355 aaKnown RBP18.42■□□□□ 0.54
SDC1-203ENST00000403076 LBRQ14739 615 aaKnown RBP18.42■□□□□ 0.54
SDC1-203ENST00000403076 TRIP13Q15645 432 aaPredicted RBP18.42■□□□□ 0.54
SDC1-203ENST00000403076 ADIPOR2Q86V24 386 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 BBS5Q8N3I7 341 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 TERB1Q8NA31 727 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 SLC2A4RGQ9NR83 387 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 RBM22Q9NW64 420 aaKnown RBP eCLIP18.42■□□□□ 0.54
SDC1-203ENST00000403076 KLHL8Q9P2G9 620 aaPredicted RBP18.42■□□□□ 0.54
SDC1-203ENST00000403076 SORCS3Q9UPU3 1222 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 TICRRQ7Z2Z1 1910 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 SHROOM3Q8TF72 1996 aa18.42■□□□□ 0.54
SDC1-203ENST00000403076 NYNRINQ9P2P1 1898 aaKnown RBP18.41■□□□□ 0.54
SDC1-203ENST00000403076 C19orf67A6NJJ6 358 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 RAD51CO43502 376 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 KAT7O95251 611 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 ASLP04424 464 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 ETS1P14921 441 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 PTPN3P26045 913 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 PTGIRP43119 386 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 CTSOP43234 321 aaPredicted RBP18.41■□□□□ 0.54
SDC1-203ENST00000403076 MMP13P45452 471 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 NRLP54845 237 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 IFI35P80217 286 aaPredicted RBP18.41■□□□□ 0.54
SDC1-203ENST00000403076 ECT2LQ008S8 904 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 SLC20A2Q08357 652 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 SLC10A7Q0GE19 358 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 MESP2Q0VG99 397 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 ZNF235Q14590 738 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 TEX44Q53QW1 395 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 FAM182AQ5T1J6 154 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 ARHGEF18Q6ZSZ5 1173 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 PID1Q7Z2X4 250 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 PRUNE1Q86TP1 453 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 JAMLQ86YT9 394 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 CCDC110Q8TBZ0 833 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 UCMAQ8WVF2 138 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 MAML1Q92585 1016 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 TTC17Q96AE7 1141 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 RPL10LQ96L21 214 aaKnown RBP18.41■□□□□ 0.54
SDC1-203ENST00000403076 VAT1Q99536 393 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 LRRC1Q9BTT6 524 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 CINPQ9BW66 212 aaPredicted RBP18.41■□□□□ 0.54
SDC1-203ENST00000403076 PDFQ9HBH1 243 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 ELOVL2Q9NXB9 296 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 DUSP12Q9UNI6 340 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 TTLL3Q9Y4R7 772 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 ACTL7AQ9Y615 435 aa18.41■□□□□ 0.54
SDC1-203ENST00000403076 A0A0A0MRY4 1105 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 C5orf60A6NFR6 353 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 FAM187AA6NFU0 413 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 PRRT4C9JH25 899 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 TIMM44O43615 452 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 NNMTP40261 264 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 VPS41P49754 854 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 ITKQ08881 620 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 WASHC5Q12768 1159 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 ZBTB17Q13105 803 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 RFTN1Q14699 578 aaPredicted RBP18.4■□□□□ 0.54
SDC1-203ENST00000403076 KCTD19Q17RG1 926 aaPredicted RBP18.4■□□□□ 0.54
SDC1-203ENST00000403076 SLC44A4Q53GD3 710 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 ANKRD20A2Q5SQ80 823 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 ANKRD20A1Q5TYW2 823 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 ANKRD20A3Q5VUR7 823 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 TMEM215Q68D42 235 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 SYDE1Q6ZW31 735 aaPredicted RBP18.4■□□□□ 0.54
SDC1-203ENST00000403076 SUGP1Q8IWZ8 645 aaKnown RBP18.4■□□□□ 0.54
SDC1-203ENST00000403076 ATP11CQ8NB49 1132 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 SLCO2A1Q92959 643 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 FATE1Q969F0 183 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 SPATA13Q96N96 652 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 AGAP3Q96P47 875 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 NT5MQ9NPB1 228 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 HAUS2Q9NVX0 235 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 SEPT3Q9UH03 358 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 ASIC3Q9UHC3 531 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 TRHDEQ9UKU6 1024 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 ERVW-1Q9UQF0 538 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 CHD5Q8TDI0 1954 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 EYSQ5T1H1 3165 aa18.4■□□□□ 0.54
SDC1-203ENST00000403076 GCATO75600 419 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 PEX11BO96011 259 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 MT-CO1P00395 513 aa18.39■□□□□ 0.54
SDC1-203ENST00000403076 ZSCAN5DPP0CG00 497 aa18.39■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms