RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 ADGRA2Q96PE1 1338 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 MRC1P22897 1456 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 C9JVG2 144 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 HTRA2O43464 458 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 CAPN15O75808 1086 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 CHRNGP07510 517 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 POLR2EP19388 210 aaKnown RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 RAP1GAPP47736 663 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 UGP2Q16851 508 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ARMCX4Q5H9R4 360 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PPP2R2DQ66LE6 453 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 MON1BQ7L1V2 547 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GPR180Q86V85 440 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 UNC5BQ8IZJ1 945 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 SHKBP1Q8TBC3 707 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 URGCPQ8TCY9 931 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 SEPT1Q8WYJ6 367 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 IRGQQ8WZA9 623 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ZBTB18Q99592 522 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 MXRA8Q9BRK3 442 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 EPS8L2Q9H6S3 715 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 CACNA2D2Q9NY47 1150 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 SMPD3Q9NY59 655 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PSME2Q9UL46 239 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 SNX8Q9Y5X2 465 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 MYH2Q9UKX2 1941 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 CAPN14A8MX76 684 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 SERPINB7O75635 380 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GCAP28676 217 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 SERPINH1P50454 418 aaKnown RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PTP4A2Q12974 167 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 KCNJ8Q15842 424 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF568Q3ZCX4 644 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 GRTP1Q5TC63 336 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ANKRD13AQ8IZ07 590 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 OR2T34Q8NGX1 318 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 OR2T3Q8NH03 318 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 CDC26Q8NHZ8 85 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 MTERF3Q96E29 417 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 CEP295NLQ96MC4 621 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 RTFDC1Q9BY42 306 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 TPK1Q9H3S4 243 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 HPS4Q9NQG7 708 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ITM2CQ9NQX7 267 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF277Q9NRM2 450 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-201ENST00000399429 NRBP2Q9NSY0 501 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 ZNRF3Q9ULT6 936 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 PCDHA11Q9Y5I1 949 aa9.45□□□□□ -0.9
COL28A1-201ENST00000399429 MYH1P12882 1939 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 MYH4Q9Y623 1939 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 ILVBLA1L0T0 632 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 KCNK1O00180 336 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 FYNP06241 537 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 COL6A2P12110 1019 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 IFI30P13284 250 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 DEPDC1Q5TB30 811 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 C4orf22Q6V702 233 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 LARGE2Q8N3Y3 721 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 JOSD2Q8TAC2 188 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 SLC39A3Q9BRY0 314 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 CNPY3Q9BT09 278 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 GATA5Q9BWX5 397 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 SENP6Q9GZR1 1112 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 RAVER2Q9HCJ3 691 aaKnown RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 TBC1D13Q9NVG8 400 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 SIRPGQ9P1W8 387 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 FBXO40Q9UH90 709 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 OAZ3Q9UMX2 235 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 CFHP08603 1231 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 CYP2F1P24903 491 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 RXRBP28702 533 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 PTPN7P35236 360 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 RPS9P46781 194 aaKnown RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 FRG1Q14331 258 aaKnown RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 SNX17Q15036 470 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 FAAH2Q6GMR7 532 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 LRRC8DQ7L1W4 858 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 PHF13Q86YI8 300 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 PDPRQ8NCN5 879 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 GRIN3AQ8TCU5 1115 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 FAR1Q8WVX9 515 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 FIG4Q92562 907 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 CPNE1Q99829 537 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 MIR1-1HGQ9H1L0 117 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 SOX17Q9H6I2 414 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 C17orf75Q9HAS0 396 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 LRRC4Q9HBW1 653 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 IFT80Q9P2H3 777 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 RABL2AQ9UBK7 228 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 CCNL1Q9UK58 526 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 MYH3P11055 1940 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 DIP2AQ14689 1571 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 DIP2BQ9P265 1576 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 HUS1O60921 280 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 DGAT1O75907 488 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 LSM8O95777 96 aaKnown RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 FUCA1P04066 466 aa9.44□□□□□ -0.9
COL28A1-201ENST00000399429 F7P08709 466 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 UNGP13051 313 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-201ENST00000399429 DDX5P17844 614 aaKnown RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms