RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SEMA4DQ92854 862 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 SIPA1Q96FS4 1042 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 SPATA13Q96N96 652 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 SERPINB11Q96P15 392 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ARHGAP28Q9P2N2 729 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ZC3H13Q5T200 1668 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 JCADQ9P266 1359 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 SIGLEC16A6NMB1 481 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 LIASO43766 372 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 CYP3A4P08684 503 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 MYL12AP19105 171 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 HNRNPH3P31942 346 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 RPL5P46777 297 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 TUBP50607 506 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 TBX4P57082 545 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ELAVL2Q12926 359 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 MIIPQ5JXC2 388 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 FAM117BQ6P1L5 589 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 DHDDSQ86SQ9 333 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 PRELID2Q8N945 189 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 EDEM1Q92611 657 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 CNTNAP2Q9UHC6 1331 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 CHD1O14646 1710 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 NWD1Q149M9 1564 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 MAGEA2P43356 314 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 C5orf22Q49AR2 442 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 NEK5Q6P3R8 708 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF605Q86T29 641 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 DGCR14Q96DF8 476 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 SMARCD1Q96GM5 515 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 PIH1D1Q9NWS0 290 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 SNTG2Q9NY99 539 aa10.4□□□□□ -0.74
LIMCH1-203ENST00000396595 CEP170BQ9Y4F5 1589 aaPredicted RBP10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 A0A0B4J269 797 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 FAM237BA0A1B0GVD1 139 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 ATP6V1G1O75348 118 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 ENDOD1O94919 500 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 RFX3P48380 749 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 CASP7P55210 303 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 RALGDSQ12967 914 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 GRIK3Q13003 919 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 NEPROQ6NW34 567 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 DNAJC14Q6Y2X3 702 aaPredicted RBP10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF276Q8N554 614 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 ALLCQ8N6M5 410 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 TSPAN14Q8NG11 270 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 LRRC20Q8TCA0 184 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 SEMA6AQ9H2E6 1030 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 ING3Q9NXR8 418 aa10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 SCAF8Q9UPN6 1271 aaKnown RBP10.4□□□□□ -0.75
LIMCH1-203ENST00000396595 H3BRB1 525 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 UBXN8O00124 270 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 EML1O00423 815 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 C2CD2LO14523 706 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 MYL12BO14950 172 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 NKRFO15226 690 aaKnown RBP eCLIP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 STAU1O95793 577 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ATP6V1C1P21283 382 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 TUFMP49411 452 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF157P51786 506 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 EN1Q05925 392 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PPP3CAQ08209 521 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PDK3Q15120 406 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 OVOS1Q6IE37 1185 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PSTKQ8IV42 348 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 SCUBE3Q8IX30 993 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PCDH20Q8N6Y1 951 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 TUT1Q9H6E5 874 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ARMC7Q9H6L4 198 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 CAPN10Q9HC96 672 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 TNPO3Q9Y5L0 923 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 SF3B1O75533 1304 aaKnown RBP eCLIP10.39□□□□□ -0.751e-8■■■■■ 160.4
LIMCH1-203ENST00000396595 KLRC4O43908 158 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 MYBL2P10244 700 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 COX4I1P13073 169 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 INSRRP14616 1297 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PLK1P53350 603 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ADAM17P78536 824 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PRKCQQ04759 706 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 BST1Q10588 318 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 SQLEQ14534 574 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 SHROOM1Q2M3G4 852 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 EIF2S3LQ2VIR3 472 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 INO80DQ53TQ3 878 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC27A1Q6PCB7 646 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 C1orf186Q6ZWK4 172 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 MCOLN3Q8TDD5 553 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 BAP1Q92560 729 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 TBATAQ96M53 351 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 OSMRQ99650 979 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 REEP1Q9H902 201 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 KIAA1210Q9ULL0 1709 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 DIP2AQ14689 1571 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 E5RJQ4 531 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 BTN3A1O00481 513 aa10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 ARF4P18085 180 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PAICSP22234 425 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 PBLDP30039 288 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 FEN1P39748 380 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-203ENST00000396595 NAGLUP54802 743 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms