RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 APOL1O14791 398 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 BUB1O43683 1085 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 MMP2P08253 660 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 MSNP26038 577 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 RPL26P61254 145 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 ECT2LQ008S8 904 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 CDO1Q16878 200 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 EOGTQ5NDL2 527 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 DAB2IPQ5VWQ8 1189 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 KCTD11Q693B1 232 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 TMCO3Q6UWJ1 677 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 NUDT18Q6ZVK8 323 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 HMCESQ96FZ2 354 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 RPRD1AQ96P16 312 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 NUDCD1Q96RS6 583 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 TRIB3Q96RU7 358 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PHACTR1Q9C0D0 580 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 GPR27Q9NS67 375 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 DNAJC17Q9NVM6 304 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PCYOX1Q9UHG3 505 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PPM1HQ9ULR3 514 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 RPL26L1Q9UNX3 145 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 MYOFQ9NZM1 2061 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 COL5A1P20908 1838 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 RAMP2O60895 175 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 SUN1O94901 812 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 TJP3O95049 919 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 RHOCP08134 193 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 TEAD1P28347 426 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 MAPK8P45983 427 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 PAPOLAP51003 745 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 RENBPP51606 427 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 CDR1P51861 262 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 WASHC5Q12768 1159 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 MMRN1Q13201 1228 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 SLC45A4Q5BKX6 768 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 NLRP8Q86W28 1048 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 FBXL6Q8N531 539 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 KCTD6Q8NC69 237 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 ZBTB44Q8NCP5 570 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 ARNT2Q9HBZ2 717 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 EIF2B3Q9NR50 452 aaKnown RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 FZD4Q9ULV1 537 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 HYOU1Q9Y4L1 999 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 TP53BP1Q12888 1972 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-202ENST00000394943 CEP192Q8TEP8 1941 aa7.16□□□□□ -1.26
LIMA1-202ENST00000394943 A0A0D9SEW6 157 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 LIASO43766 372 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 SOCS5O75159 536 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 KRT1P04264 644 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 HMBSP08397 361 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 NTSR1P30989 418 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 FNTAP49354 379 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 ZNF234Q14588 700 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 POLD3Q15054 466 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-202ENST00000394943 PDK1Q15118 436 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 PON2Q15165 354 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 RPS6KA1Q15418 735 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 P3H1Q32P28 736 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 NCEH1Q6PIU2 408 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 SLC35F6Q8N357 371 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 ARRDC2Q8TBH0 407 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 ZC3H10Q96K80 434 aaKnown RBP7.15□□□□□ -1.26
LIMA1-202ENST00000394943 NSMCE3Q96MG7 304 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 ZNF641Q96N77 438 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-202ENST00000394943 RUNDC3BQ96NL0 473 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 OSBPL9Q96SU4 736 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 C1QTNF1Q9BXJ1 281 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 OSBPL1AQ9BXW6 950 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 GPATCH2LQ9NWQ4 482 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 MPP6Q9NZW5 540 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 TRHDEQ9UKU6 1024 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 MTF2Q9Y483 593 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-202ENST00000394943 PROB1E7EW31 1015 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 GALR2O43603 387 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-202ENST00000394943 VAV1P15498 845 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 AMPD1P23109 780 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 EPHB2P29323 1055 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 OR1E1P30953 314 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 CNR2P34972 360 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 ADRA1AP35348 466 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 VCPP55072 806 aaKnown RBP7.15□□□□□ -1.26
LIMA1-202ENST00000394943 CDKN3Q16667 212 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 KCNT1Q5JUK3 1230 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 RNF219Q5W0B1 726 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-202ENST00000394943 NAIF1Q69YI7 327 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-202ENST00000394943 PGBD5Q8N414 524 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 TMEM105Q8N8V8 129 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 DDI1Q8WTU0 396 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 WDR24Q96S15 920 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 PCSK1NQ9UHG2 260 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 GUCA1BQ9UMX6 200 aa7.15□□□□□ -1.26
LIMA1-202ENST00000394943 MCF2LO15068 1137 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 KIF5CO60282 957 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 EPOP01588 193 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 ATP1A1P05023 1023 aaKnown RBP7.15□□□□□ -1.27
LIMA1-202ENST00000394943 ATP5BP06576 529 aaKnown RBP7.15□□□□□ -1.27
LIMA1-202ENST00000394943 CCR3P51677 355 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 DGKEP52429 567 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 C22orf39Q6P5X5 142 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms