RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ATP11BQ9Y2G3 1177 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 ACTL7AQ9Y615 435 aa11.34□□□□□ -0.59
TCOF1-203ENST00000394269 MTMR11A4FU01 709 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 PIRTP0C851 137 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 ALADP13716 330 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 GP5P40197 560 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 CD86P42081 329 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 SLC18A1P54219 525 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 NKX3-2P78367 333 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 STX3Q13277 289 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 RCN2Q14257 317 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 EML3Q32P44 896 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 FBXL22Q6P050 247 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 ZNF276Q8N554 614 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 FAM136AQ96C01 138 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 MTBPQ96DY7 904 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 PRR11Q96HE9 360 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 NAT9Q9BTE0 207 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 TTPALQ9BTX7 342 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 GLOD4Q9HC38 313 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 TLR8Q9NR97 1041 aaKnown RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 TMEM216Q9P0N5 145 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 ZNF638Q14966 1978 aaKnown RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 TSPAN3O60637 253 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 IRF9Q00978 393 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 MPP3Q13368 585 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 ZNF460Q14592 562 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 RALGAPA2Q2PPJ7 1873 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 MS4A13Q5J8X5 152 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 ALYREFQ86V81 257 aaKnown RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 FAM126BQ8IXS8 530 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 BCL7CQ8WUZ0 217 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 SCYL1Q96KG9 808 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 TBL1YQ9BQ87 522 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 TSEN34Q9BSV6 310 aaKnown RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 C20orf27Q9GZN8 174 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 SSU72Q9NP77 194 aaKnown RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 PRDM5Q9NQX1 630 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 EIF2B3Q9NR50 452 aaKnown RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 GKN1Q9NS71 199 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 PPARGC1AQ9UBK2 798 aaKnown RBP11.33□□□□□ -0.6
TCOF1-203ENST00000394269 SLC12A4Q9UP95 1085 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 SCML2Q9UQR0 700 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 XIRP2A4UGR9 3374 aa11.33□□□□□ -0.6
TCOF1-203ENST00000394269 SPRP35270 261 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 AQP5P55064 265 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 BNIP1Q12981 228 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 RNF43Q68DV7 783 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 PLD6Q8N2A8 252 aaKnown RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 GBP7Q8N8V2 638 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 GPATCH11Q8N954 259 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 ANKLE1Q8NAG6 615 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 OR6P1Q8NGX9 317 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 C10orf82Q8WW14 230 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 SGF29Q96ES7 293 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 BRD8Q9H0E9 1235 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 CYP4F11Q9HBI6 524 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 SNX15Q9NRS6 342 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 MARCH5Q9NX47 278 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 AAR2Q9Y312 384 aaKnown RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 SQORQ9Y6N5 450 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 MATN3O15232 486 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 DCTN3O75935 186 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 KRT16P08779 473 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 GSTA2P09210 222 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 CCNCP24863 283 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 DSC2Q02487 901 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 TLE2Q04725 743 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 ITGA9Q13797 1035 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 USP10Q14694 798 aaKnown RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 SPANXN3Q5MJ09 141 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 MARC1Q5VT66 337 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 ATG16L1Q676U5 607 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 LDB1Q86U70 411 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 CRLF3Q8IUI8 442 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 CCNJLQ8IV13 435 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 C10orf107Q8IVU9 208 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 PARP9Q8IXQ6 854 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 RTL3Q8N8U3 475 aaKnown RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 FBXO22Q8NEZ5 403 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 NSMCE1Q8WV22 266 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 MYEOVQ96EZ4 313 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 EXOC2Q96KP1 924 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 VAT1Q99536 393 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 ZYG11BQ9C0D3 744 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 TLR6Q9Y2C9 796 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 ATXN2Q99700 1313 aaKnown RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 A0A096LPK6 155 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 ZCWPW2A0A1B0GU75 182 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 SYN3O14994 580 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 PRKCGP05129 697 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 ACVRL1P37023 503 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 ALDH18A1P54886 795 aaKnown RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 MPP1Q00013 466 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 POLD3Q15054 466 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-203ENST00000394269 CES4AQ5XG92 561 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 LGI2Q8N0V4 545 aa11.32□□□□□ -0.6
TCOF1-203ENST00000394269 FUBP3Q96I24 572 aaKnown RBP eCLIP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms