RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TBX21Q9UL17 535 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 MYOCOSA0A1B0GUC4 107 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 H0YJX3 145 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 TRDMT1O14717 391 aaKnown RBP11.35□□□□□ -0.59
CUX1-204ENST00000393824 B4GALT3O60512 393 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 CFHP08603 1231 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 KRT19P08727 400 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 PRKCHP24723 683 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 CDH5P33151 784 aaPredicted RBP11.35□□□□□ -0.59
CUX1-204ENST00000393824 YWHAGP61981 247 aaKnown RBP eCLIP11.35□□□□□ -0.59
CUX1-204ENST00000393824 TUBA4AP68366 448 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 MTM1Q13496 603 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 C16orf72Q14CZ0 275 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 DUOXA2Q1HG44 320 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 STXBP5Q5T5C0 1151 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 TXNRD3NBQ6F5E7 133 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 RWDD4Q6NW29 188 aaKnown RBP11.35□□□□□ -0.59
CUX1-204ENST00000393824 DCUN1D2Q6PH85 259 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 LPCAT2Q7L5N7 544 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 DEFB128Q7Z7B8 93 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 LZTR1Q8N653 840 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 TRIML2Q8N7C3 387 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 UBR7Q8N806 425 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 TRIM43Q96BQ3 446 aaPredicted RBP11.35□□□□□ -0.59
CUX1-204ENST00000393824 PAAF1Q9BRP4 392 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 RTKNQ9BST9 563 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 C11orf49Q9H6J7 331 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 PRPF19Q9UMS4 504 aaKnown RBP11.35□□□□□ -0.59
CUX1-204ENST00000393824 DNAJC16Q9Y2G8 782 aa11.35□□□□□ -0.59
CUX1-204ENST00000393824 XIRP2A4UGR9 3374 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 F8VP50 259 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 F8W810 466 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 FBP2O00757 339 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 GSRP00390 522 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 PDGFRBP09619 1106 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 ZNF12P17014 697 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 POLR2BP30876 1174 aaKnown RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 AP3M2P53677 418 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 CDKL1Q00532 357 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 DPYSL3Q14195 570 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 TMEM132DQ14C87 1099 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 BCL2A1Q16548 175 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 C6orf52Q5T4I8 152 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 TEDDM1Q5T9Z0 273 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 TMEM53Q6P2H8 277 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 C16orf87Q6PH81 154 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 NANOGNBQ7Z5D8 188 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 UBE2Q1Q7Z7E8 422 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 PPM1NQ8N819 430 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 TMEM35BQ8NCS4 154 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 FNIP1Q8TF40 1166 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 KBTBD7Q8WVZ9 684 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 CROTQ9UKG9 612 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 TTLL3Q9Y4R7 772 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 SCN1AP35498 2009 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 A0A0U1RQF3 1178 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 FUOMA2VDF0 154 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 ZNF701M0R085 212 aaPredicted RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 ASS1P00966 412 aaKnown RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 COL6A2P12110 1019 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 PSMC3P17980 439 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 PPARGP37231 505 aaPredicted RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 IDH3AP50213 366 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 TXNL4AP83876 142 aaKnown RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 HADHQ16836 314 aaKnown RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 MBLAC2Q68D91 279 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 PDPK2PQ6A1A2 396 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 SCARA5Q6ZMJ2 495 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 ZCCHC23Q6ZST2 131 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 TMCO2Q7Z6W1 182 aaPredicted RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 UNC45BQ8IWX7 931 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 CHERPQ8IWX8 916 aaKnown RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 PPP4R1Q8TF05 950 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 SGF29Q96ES7 293 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 MCEEQ96PE7 176 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 ASB7Q9H672 318 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 C10orf88Q9H8K7 445 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 LIN28AQ9H9Z2 209 aaKnown RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 VPS45Q9NRW7 570 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 KIAA1522Q9P206 1035 aaPredicted RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 SAE1Q9UBE0 346 aaPredicted RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 HCSTQ9UBK5 93 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 BCAP29Q9UHQ4 241 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 VPS28Q9UK41 221 aa11.34□□□□□ -0.59
CUX1-204ENST00000393824 HEMK1Q9Y5R4 338 aaPredicted RBP11.34□□□□□ -0.59
CUX1-204ENST00000393824 LOC100653049A0A140TA62 436 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 ARL5CA6NH57 179 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 SOBPA7XYQ1 873 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 PITPNM1O00562 1244 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 ZNF195O14628 629 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 KRT34O76011 436 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 IL18RAPO95256 599 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 H6PDO95479 791 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 C8BP07358 591 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 COX4I1P13073 169 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 RAP1GAPP47736 663 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 GATMP50440 423 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 SCNN1GP51170 649 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 CDH8P55286 799 aa11.33□□□□□ -0.6
CUX1-204ENST00000393824 BASP1P80723 227 aaKnown RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms