RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 TCAF2A6NFQ2 919 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 CNTN5O94779 1100 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 GSTA1P08263 222 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 MYOGP15173 224 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 IFNAR2P48551 515 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 IL10RBQ08334 325 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 ZNF177Q13360 481 aaPredicted RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 KLHL38Q2WGJ6 581 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 FNBP1LQ5T0N5 605 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 ARTNQ5T4W7 220 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 TXNDC8Q6A555 127 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 LRRC8BQ6P9F7 803 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 LINC00523Q86TU6 105 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 SETD3Q86TU7 594 aaPredicted RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 TRABD2AQ86V40 505 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 CNPY4Q8N129 248 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 BBS5Q8N3I7 341 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 ARL14EPQ8N8R7 260 aaPredicted RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 NETO2Q8NC67 525 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 HJURPQ8NCD3 748 aaPredicted RBP18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 FBXO36Q8NEA4 188 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 AGAP3Q96P47 875 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 IL12RB2Q99665 862 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 LRRC40Q9H9A6 602 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 GKN1Q9NS71 199 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 SMPD4Q9NXE4 827 aa18.56■□□□□ 0.56
CCDC88C-203ENST00000389856 FAM47DPA6NHR8 397 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 CCT8L1PA6NM43 557 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 ANKRD65E5RJM6 399 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 ZBTB24O43167 697 aaPredicted RBP18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 CSPG5O95196 566 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 AP2A1O95782 977 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 IL9RQ01113 521 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 TMCO4Q5TGY1 634 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 ZNF783Q6ZMS7 281 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 GAREM2Q75VX8 874 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 CCDC117Q8IWD4 279 aaPredicted RBP18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 DEPDC1BQ8WUY9 529 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 CCT6BQ92526 530 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 ZNF599Q96NL3 588 aa18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 PSMC3IPQ9P2W1 217 aaPredicted RBP18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 ZFP37Q9Y6Q3 630 aaPredicted RBP18.55■□□□□ 0.56
CCDC88C-203ENST00000389856 A0A1W2PRU2 124 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 GRXCR1A8MXD5 290 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 ZNF197O14709 1029 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 SUN1O94901 812 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 SLC6A4P31645 630 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 STX2P32856 288 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 CYP4F8P98187 520 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 ZBTB17Q13105 803 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 MARC1Q5VT66 337 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 NAPEPLDQ6IQ20 393 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 ANKMY2Q8IV38 441 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 HS6ST3Q8IZP7 471 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 PDCD7Q8N8D1 485 aaKnown RBP18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 MAB21L3Q8N8X9 362 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 SLC22A17Q8WUG5 538 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 PPP2R3CQ969Q6 453 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 HMCESQ96FZ2 354 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 ZFRQ96KR1 1074 aaKnown RBP18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 FCRL5Q96RD9 977 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 CEP41Q9BYV8 373 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 NOL6Q9H6R4 1146 aaKnown RBP18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 NDFIP2Q9NV92 336 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 RBM22Q9NW64 420 aaKnown RBP eCLIP18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 TEX264Q9Y6I9 313 aa18.54■□□□□ 0.56
CCDC88C-203ENST00000389856 ILVBLA1L0T0 632 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 CCDC85CA6NKD9 419 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 SNX3O60493 162 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 KLKB1P03952 638 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 NFKB1P19838 968 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 AVPR1AP37288 418 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 ELK3P41970 407 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 MAGEA3P43357 314 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 GEMP55040 296 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 GEMIN4P57678 1058 aaKnown RBP18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 GNA12Q03113 381 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 SERINC3Q13530 473 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 TMED2Q15363 201 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 RFWD3Q6PCD5 774 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 RGS9BPQ6ZS82 235 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 CYP4X1Q8N118 509 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 GBP7Q8N8V2 638 aaPredicted RBP18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 GLOD4Q9HC38 313 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 CTNNAL1Q9UBT7 734 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 ZNF212Q9UDV6 495 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 ARHGAP26Q9UNA1 814 aa18.53■□□□□ 0.56
CCDC88C-203ENST00000389856 SDR42E2A6NKP2 422 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 H0YHG0 523 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 RHOCP08134 193 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 IRS1P35568 1242 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 OXCT1P55809 520 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 GAD2Q05329 585 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 C3orf62Q6ZUJ4 267 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 HTR3DQ70Z44 454 aa18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 CAND1Q86VP6 1230 aaKnown RBP18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 SRRM1Q8IYB3 904 aaKnown RBP18.52■□□□□ 0.56
CCDC88C-203ENST00000389856 ALKBH8Q96BT7 664 aaKnown RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms