RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SPATA22Q8NHS9 363 aa25.66■■□□□ 1.7
SHOX2-201ENST00000389589 NSMCE1Q8WV22 266 aa25.66■■□□□ 1.7
SHOX2-201ENST00000389589 ZNF419Q96HQ0 510 aaPredicted RBP25.66■■□□□ 1.7
SHOX2-201ENST00000389589 APOL2Q9BQE5 337 aa25.66■■□□□ 1.7
SHOX2-201ENST00000389589 PITPNM3Q9BZ71 974 aa25.66■■□□□ 1.7
SHOX2-201ENST00000389589 USP15Q9Y4E8 981 aaPredicted RBP25.66■■□□□ 1.7
SHOX2-201ENST00000389589 YIPF1Q9Y548 306 aa25.66■■□□□ 1.7
SHOX2-201ENST00000389589 TRIM43BA6NCK2 446 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 BAIAP3O94812 1187 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 PEX11BO96011 259 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 RAG1P15918 1043 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 HARS2P49590 506 aaKnown RBP25.65■■□□□ 1.7
SHOX2-201ENST00000389589 BMPR2Q13873 1038 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 NADSYN1Q6IA69 706 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 CCDC117Q8IWD4 279 aaPredicted RBP25.65■■□□□ 1.7
SHOX2-201ENST00000389589 TRIM43Q96BQ3 446 aaPredicted RBP25.65■■□□□ 1.7
SHOX2-201ENST00000389589 FCRL3Q96P31 734 aaPredicted RBP25.65■■□□□ 1.7
SHOX2-201ENST00000389589 SP110Q9HB58 689 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 ENTPD7Q9NQZ7 604 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 SLC17A7Q9P2U7 560 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 MAFFQ9ULX9 164 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 ANAPC1Q9H1A4 1944 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 CHD5Q8TDI0 1954 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 ATP9BO43861 1147 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 ACSL4O60488 711 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 RAMP2O60895 175 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 ITGB8P26012 769 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 PPP3CCP48454 512 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 SLC11A2P49281 568 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 KCNQ1P51787 676 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 ZKSCAN8Q15776 578 aaPredicted RBP25.65■■□□□ 1.7
SHOX2-201ENST00000389589 MROH9Q5TGP6 573 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 TMCO2Q7Z6W1 182 aaPredicted RBP25.65■■□□□ 1.7
SHOX2-201ENST00000389589 OTUD6BQ8N6M0 293 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 PLD4Q96BZ4 506 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 SLC25A51Q9H1U9 297 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 TXNDC16Q9P2K2 825 aa25.65■■□□□ 1.7
SHOX2-201ENST00000389589 HMX2A2RU54 273 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 MT-CYBP00156 380 aaPredicted RBP25.64■■□□□ 1.7
SHOX2-201ENST00000389589 DHRS4L1P0CG22 281 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 PPM1AP35813 382 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 CORO7P57737 925 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 MPP3Q13368 585 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 POLD3Q15054 466 aaPredicted RBP25.64■■□□□ 1.7
SHOX2-201ENST00000389589 MARC1Q5VT66 337 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 CES3Q6UWW8 571 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 SPATA21Q7Z572 469 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 GPR65Q8IYL9 337 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 AZIN2Q96A70 460 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 SRPK1Q96SB4 655 aaKnown RBP25.64■■□□□ 1.7
SHOX2-201ENST00000389589 CPNE1Q99829 537 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 PLCD4Q9BRC7 762 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 STK39Q9UEW8 545 aa25.64■■□□□ 1.7
SHOX2-201ENST00000389589 ZCWPW2A0A1B0GU75 182 aa25.64■■□□□ 1.69
SHOX2-201ENST00000389589 ETV4P43268 484 aa25.64■■□□□ 1.69
SHOX2-201ENST00000389589 TNK2Q07912 1038 aa25.64■■□□□ 1.69
SHOX2-201ENST00000389589 IL10RBQ08334 325 aa25.64■■□□□ 1.69
SHOX2-201ENST00000389589 CCDC121Q6ZUS5 278 aa25.64■■□□□ 1.69
SHOX2-201ENST00000389589 IPMKQ8NFU5 416 aa25.64■■□□□ 1.69
SHOX2-201ENST00000389589 ACMSDQ8TDX5 336 aa25.64■■□□□ 1.69
SHOX2-201ENST00000389589 KIFC1Q9BW19 673 aa25.64■■□□□ 1.69
SHOX2-201ENST00000389589 COCHO43405 550 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 ERVK-10P10266 1014 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 OR1E1P30953 314 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 ELF1P32519 619 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 ADRA1AP35348 466 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 GP5P40197 560 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 GRTP1Q5TC63 336 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 NECAB2Q7Z6G3 386 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 LGI2Q8N0V4 545 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP25.63■■□□□ 1.69
SHOX2-201ENST00000389589 ZNF75CPQ92670 426 aaPredicted RBP25.63■■□□□ 1.69
SHOX2-201ENST00000389589 FICDQ9BVA6 458 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 STARD13Q9Y3M8 1113 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 PTPRSQ13332 1948 aa25.63■■□□□ 1.69
SHOX2-201ENST00000389589 GJB5O95377 273 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 TPH1P17752 444 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 PCID2Q5JVF3 399 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 ARMC3Q5W041 872 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 TEX26Q8N6G2 289 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 FAM111AQ96PZ2 611 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 YME1L1Q96TA2 773 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 FSD1LQ9BXM9 530 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP25.62■■□□□ 1.69
SHOX2-201ENST00000389589 J3KR12 359 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 PRRG1O14668 218 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 CREMQ03060 361 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 SERINC3Q13530 473 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 RNF187Q5TA31 235 aaPredicted RBP25.62■■□□□ 1.69
SHOX2-201ENST00000389589 POTEHQ6S545 545 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 ZNF354CQ86Y25 554 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 TCEAL8Q8IYN2 117 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 PTCD2Q8WV60 388 aaKnown RBP25.62■■□□□ 1.69
SHOX2-201ENST00000389589 CHRAC1Q9NRG0 131 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 VPS45Q9NRW7 570 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 MRPL17Q9NRX2 175 aaKnown RBP25.62■■□□□ 1.69
SHOX2-201ENST00000389589 UXTQ9UBK9 157 aaPredicted RBP25.62■■□□□ 1.69
SHOX2-201ENST00000389589 PLLPQ9Y342 182 aa25.62■■□□□ 1.69
SHOX2-201ENST00000389589 RABGAP1LQ5R372 815 aa25.61■■□□□ 1.69
SHOX2-201ENST00000389589 PSMG2Q969U7 264 aa25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms