RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 HTR3DQ70Z44 454 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 SPATA21Q7Z572 469 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 PCGF5Q86SE9 256 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 SIX6OS1Q8N1H7 587 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 CPA6Q8N4T0 437 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 ALLCQ8N6M5 410 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 TMEM35BQ8NCS4 154 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 GIMAP7Q8NHV1 300 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 ADAM32Q8TC27 787 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 ATOH1Q92858 354 aaPredicted RBP12.7□□□□□ -0.38
VRK3-202ENST00000377011 MYEOVQ96EZ4 313 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 RBM15Q96T37 977 aaKnown RBP eCLIP12.7□□□□□ -0.383e-6■■■■□ 20.8
VRK3-202ENST00000377011 CD248Q9HCU0 757 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 PLK2Q9NYY3 685 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 DNMT3LQ9UJW3 386 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 STRIP2Q9ULQ0 834 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 TPX2Q9ULW0 747 aaKnown RBP12.7□□□□□ -0.38
VRK3-202ENST00000377011 CLEC4EQ9ULY5 219 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 SMG5Q9UPR3 1016 aaKnown RBP12.7□□□□□ -0.38
VRK3-202ENST00000377011 NAALADL1Q9UQQ1 740 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 SH3BP1Q9Y3L3 701 aa12.7□□□□□ -0.38
VRK3-202ENST00000377011 SDK1Q7Z5N4 2213 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 SLC12A8A0AV02 714 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 K7EQS6 105 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 PRPF4O43172 522 aaKnown RBP eCLIP12.69□□□□□ -0.38
VRK3-202ENST00000377011 KRT1P04264 644 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 RPS9P46781 194 aaKnown RBP12.69□□□□□ -0.38
VRK3-202ENST00000377011 PTPN5P54829 565 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 IL9RQ01113 521 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 P3H1Q32P28 736 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 DNAJC24Q6P3W2 148 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 KLHDC10Q6PID8 442 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 GSTA5Q7RTV2 222 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 PHTF2Q8N3S3 785 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 MAML1Q92585 1016 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 P2RY13Q9BPV8 354 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 HEMGNQ9BXL5 484 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 ADAM33Q9BZ11 813 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 CXorf56Q9H5V9 222 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 PCDH9Q9HC56 1237 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 SSU72Q9NP77 194 aaKnown RBP12.69□□□□□ -0.38
VRK3-202ENST00000377011 KCNK9Q9NPC2 374 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 CNGB3Q9NQW8 809 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 MARCH2Q9P0N8 246 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 SLC24A2Q9UI40 661 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 AGO1Q9UL18 857 aaKnown RBP12.69□□□□□ -0.38
VRK3-202ENST00000377011 CEP83Q9Y592 693 aa12.69□□□□□ -0.38
VRK3-202ENST00000377011 GVINP1Q7Z2Y8 2422 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 FAM47DPA6NHR8 397 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 ERBB2P04626 1255 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 TSHRP16473 764 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 CORO1AP31146 461 aaKnown RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 SGSHP51688 502 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 SEC13P55735 322 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 CSTF1Q05048 431 aaKnown RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 KDSRQ06136 332 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 BNIP1Q12981 228 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 TRIP13Q15645 432 aaPredicted RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 PTPN20Q4JDL3 420 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 ZC3H12AQ5D1E8 599 aaKnown RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 PPP1R15BQ5SWA1 713 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 BTBD8Q5XKL5 378 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 NUGGCQ68CJ6 796 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 SPOCD1Q6ZMY3 1216 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 ETFBKMTQ8IXQ9 262 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 ZNF276Q8N554 614 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 TTC13Q8NBP0 860 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 FNIP1Q8TF40 1166 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 HSFY1Q96LI6 401 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 NELL2Q99435 816 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 FGFR1OP2Q9NVK5 253 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 MRPS17Q9Y2R5 130 aaKnown RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 OTOGLQ3ZCN5 2332 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 DCHS1Q96JQ0 3298 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 EML5Q05BV3 1969 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 hCG_1818297A0A087WSY0 165 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 K7ESF4 209 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 ALOX15BO15296 676 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 GRAP2O75791 330 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 NFATC1O95644 943 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 ADH5P11766 374 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 HNRNPLP14866 589 aaKnown RBP eCLIP12.68□□□□□ -0.38
VRK3-202ENST00000377011 PXNP49023 591 aaPredicted RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 SLC8A3P57103 927 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 SRSF5Q13243 272 aaKnown RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 OASLQ15646 514 aaKnown RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 TFDP3Q5H9I0 405 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 TMEM110Q86TL2 294 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 TRABD2AQ86V40 505 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 DENND1CQ8IV53 801 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 ERLEC1Q96DZ1 483 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 FAM122AQ96E09 287 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 DNAI2Q9GZS0 605 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 KCNH6Q9H252 994 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 PRMT8Q9NR22 394 aaPredicted RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 SPHK2Q9NRA0 654 aa12.68□□□□□ -0.38
VRK3-202ENST00000377011 XPO7Q9UIA9 1087 aaKnown RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 ARIH1Q9Y4X5 557 aaPredicted RBP12.68□□□□□ -0.38
VRK3-202ENST00000377011 EXOC1LA0A1B0GW35 172 aa12.67□□□□□ -0.38
VRK3-202ENST00000377011 RASA4BC9J798 803 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms